Gene Symbol | LOC541952 |
Entrez Gene ID | 541952 |
Full Name | nucleosome/chromatin assembly factor D |
Synonyms | GRMZM2G125648 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC541952 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
XM_008679554.2 | XP_008677776.1 | nucleosome/chromatin assembly factor D isoform X1 |
NM_001111606.2 | NP_001105076.1 | nucleosome/chromatin assembly factor D |
NM_001358409.1 | NP_001345338.1 | nucleosome/chromatin assembly factor D |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
Insights into corn genes derived from large-scale cDNA sequencing.
Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA
Plant molecular biology69(1-2)179-94(2009 Jan)
Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings.
Jia J, Fu J, Zheng J, Zhou X, Huai J, Wang J, Wang M, Zhang Y, Chen X, Zhang J, Zhao J, Su Z, Lv Y, Wang G
The Plant journal : for cell and molecular biology48(5)710-27(2006 Dec)
Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization.
Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund C, Coe EH Jr
Plant physiology134(4)1317-26(2004 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC541952 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC541952 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa17927 | |
Clone ID Related Accession (Same CDS sequence) | NM_001111606.2 | |
Accession Version | NM_001111606.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 465bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1490976000000 | |
Organism | Zea mays | |
Product | nucleosome/chromatin assembly factor D | |
Comment | PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF440223.1. On Feb 4, 2016 this sequence version replaced NM_001111606.1. ##Evidence-Data-START## Transcript exon combination :: AF440223.1, DR968594.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780141, SAMN00780142 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGACGCTCG AGGCGCAGGT CGTCGAGAAG ACCGTCGAGG TCGCCAGTGC GGACCGCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001105076.1 |
CDS | 17..481 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGACGCTCG AGGCGCAGGT CGTCGAGAAG ACCGTCGAGG TCGCCAGTGC GGACCGCAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa69646 | |
Clone ID Related Accession (Same CDS sequence) | NM_001358409.1 | |
Accession Version | NM_001358409.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 639bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1551628800000 | |
Organism | Zea mays | |
Product | nucleosome/chromatin assembly factor D | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DQ245258.1 and EU967776.1. On Dec 1, 2017 this sequence version replaced XM_008679554.2. ##Evidence-Data-START## Transcript exon combination :: DQ245258.1, EU967776.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780141, SAMN00780142 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCGGGAG GCAAGTCCAC CGGCAATGCC GCGCGCAGCA GGAAGCGCGT CGAGGCAACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001345338.1 |
CDS | 65..703 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCGGGAG GCAAGTCCAC CGGCAATGCC GCGCGCAGCA GGAAGCGCGT CGAGGCAACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa22345 | |
Clone ID Related Accession (Same CDS sequence) | XM_008679554.2 | |
Accession Version | XM_008679554.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 846bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | nucleosome/chromatin assembly factor D isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008679554.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATTTCC AATTCTACAA TTTTTTGGCT GGCTTCCCTC CTCCTCCCCC CGCCGCCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008677776.1 |
CDS | 16..861 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGATTTCC AATTCTACAA TTTTTTGGCT GGCTTCCCTC CTCCTCCCCC CGCCGCCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |
Insights into corn genes derived from large-scale cDNA sequencing. |
Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings. |
Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. |