Gene Symbol | LOC100384542 |
Entrez Gene ID | 100384542 |
Full Name | uncharacterized LOC100384542 |
Synonyms | GRMZM2G067436,GRMZM2G322090 |
Gene Type | protein-coding |
Organism | Zea mays |
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ORF » Species Summary » Zea mays » LOC100384542 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
XM_008648255.2 | XP_008646477.1 | uncharacterized protein LOC100384542 isoform X2 |
NM_001177057.1 | NP_001170528.1 | uncharacterized protein LOC100384542 |
NM_001362413.1 | NP_001349342.1 | uncharacterized protein LOC100384542 |
XM_008648251.2 | XP_008646473.1 | uncharacterized protein LOC100384542 isoform X1 |
XM_008648260.2 | XP_008646482.1 | uncharacterized protein LOC100384542 isoform X3 |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
Gene discovery and annotation using LCM-454 transcriptome sequencing.
Emrich SJ, Barbazuk WB, Li L, Schnable PS
Genome research17(1)69-73(2007 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100384542 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100384542 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa19217 | |
Clone ID Related Accession (Same CDS sequence) | NM_001177057.1 | |
Accession Version | NM_001177057.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 819bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1492790400000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100384542 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT083618.1. ##Evidence-Data-START## Transcript exon combination :: BT083618.1, SRR3147052.6552.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096189, SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGAAACAG TTCTGTCTAC ACGGCAACAG ATTGAATCTC GCAATCCATT AGCATTTGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001170528.1 |
CDS | 239..1057 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGAAACAG TTCTGTCTAC ACGGCAACAG ATTGAATCTC GCAATCCATT AGCATTTGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa31108 | |
Clone ID Related Accession (Same CDS sequence) | NM_001362413.1 , XM_008648251.2 | |
Accession Version | NM_001362413.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2313bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1525363200000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100384542 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EC893852.2, BM660800.1, AW562587.1, DY396851.1, CF035802.1, BT083618.1 and DW863352.1. On Apr 14, 2018 this sequence version replaced XM_008648251.2. ##Evidence-Data-START## Transcript exon combination :: SRR3147053.19919.1, SRR3147023.2632.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780085, SAMN00780135 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGACACGC CGGATAGGCC CCGCGCCGCC GCCGCCGCCG GGTTCGAGGA TTCTCCTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001349342.1 |
CDS | 187..2499 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACACGC CGGATAGGCC CCGCGCCGCC GCCGCCGCCG GGTTCGAGGA TTCTCCTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa31108 | |
Clone ID Related Accession (Same CDS sequence) | NM_001362413.1 , XM_008648251.2 | |
Accession Version | XM_008648251.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2313bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100384542 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008648251.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACACGC CGGATAGGCC CCGCGCCGCC GCCGCCGCCG GGTTCGAGGA TTCTCCTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008646473.1 |
CDS | 182..2494 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACACGC CGGATAGGCC CCGCGCCGCC GCCGCCGCCG GGTTCGAGGA TTCTCCTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa31109 | |
Clone ID Related Accession (Same CDS sequence) | XM_008648255.2 | |
Accession Version | XM_008648255.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2295bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100384542 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008648255.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGAAATG CGAGTTCTTC AGAGCCTGAG GATTCTCCTG TCTTCAATTT CATCAACAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008646477.1 |
CDS | 243..2537 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGAAATG CGAGTTCTTC AGAGCCTGAG GATTCTCCTG TCTTCAATTT CATCAACAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa31110 | |
Clone ID Related Accession (Same CDS sequence) | XM_008648260.2 | |
Accession Version | XM_008648260.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2013bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100384542 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008648260.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATCAGAT GCAAAGACAT TGTGTCGGAC AATTGCAATA TCACTTGTCA ACTAAACGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008646482.1 |
CDS | 368..2380 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATCAGAT GCAAAGACAT TGTGTCGGAC AATTGCAATA TCACTTGTCA ACTAAACGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |
Gene discovery and annotation using LCM-454 transcriptome sequencing. |