Gene Symbol | LOC100275187 |
Entrez Gene ID | 100275187 |
Full Name | vam6/Vps39-like protein |
Synonyms | GRMZM2G176735 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC100275187 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
NM_001351046.1 | NP_001337975.1 | uncharacterized protein LOC100275187 |
XM_020546900.1 | XP_020402489.1 | uncharacterized protein LOC100275187 isoform X1 |
XM_020546899.1 | XP_020402488.1 | uncharacterized protein LOC100275187 isoform X1 |
NM_001351047.1 | NP_001337976.1 | uncharacterized protein LOC100275187 |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.
Vega-Arreguín JC, Ibarra-Laclette E, Jiménez-Moraila B, Martínez O, Vielle-Calzada JP, Herrera-Estrella L, Herrera-Estrella A
BMC genomics10299(2009 Jul)
Insights into corn genes derived from large-scale cDNA sequencing.
Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA
Plant molecular biology69(1-2)179-94(2009 Jan)
Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization.
Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund C, Coe EH Jr
Plant physiology134(4)1317-26(2004 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100275187 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100275187 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa55824 | |
Clone ID Related Accession (Same CDS sequence) | NM_001351046.1 , XM_020546900.1 , XM_020546899.1 , NM_001351047.1 | |
Accession Version | NM_001351046.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2988bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1493568000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100275187 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from LPUQ01000762.1. On May 2, 2017 this sequence version replaced XM_020546898.1. Transcript Variant: This variant (1) has thirteen exons. ##Evidence-Data-START## Transcript exon combination :: SRR3147030.15473.1, SRR3147024.16094.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGTGCACA GCGCGTACGA TGCTGTCGAG CTGGTGGCTG ACGTGCCGGG CCACATCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001337975.1 |
CDS | 108..3095 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTGCACA GCGCGTACGA TGCTGTCGAG CTGGTGGCTG ACGTGCCGGG CCACATCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa55824 | |
Clone ID Related Accession (Same CDS sequence) | NM_001351046.1 , XM_020546900.1 , XM_020546899.1 , NM_001351047.1 | |
Accession Version | NM_001351047.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2988bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1493568000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100275187 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from LPUQ01000762.1. Transcript Variant: This variant (2) has twelve exons. ##Evidence-Data-START## Transcript exon combination :: SRR3147055.17860.1, SRR3147038.3528.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGTGCACA GCGCGTACGA TGCTGTCGAG CTGGTGGCTG ACGTGCCGGG CCACATCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001337976.1 |
CDS | 179..3166 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTGCACA GCGCGTACGA TGCTGTCGAG CTGGTGGCTG ACGTGCCGGG CCACATCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa55824 | |
Clone ID Related Accession (Same CDS sequence) | NM_001351046.1 , XM_020546900.1 , XM_020546899.1 , NM_001351047.1 | |
Accession Version | XM_020546900.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2988bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100275187 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTGCACA GCGCGTACGA TGCTGTCGAG CTGGTGGCTG ACGTGCCGGG CCACATCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020402489.1 |
CDS | 1..2988 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTGCACA GCGCGTACGA TGCTGTCGAG CTGGTGGCTG ACGTGCCGGG CCACATCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa55824 | |
Clone ID Related Accession (Same CDS sequence) | NM_001351046.1 , XM_020546900.1 , XM_020546899.1 , NM_001351047.1 | |
Accession Version | XM_020546899.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2988bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100275187 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTGCACA GCGCGTACGA TGCTGTCGAG CTGGTGGCTG ACGTGCCGGG CCACATCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020402488.1 |
CDS | 175..3162 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTGCACA GCGCGTACGA TGCTGTCGAG CTGGTGGCTG ACGTGCCGGG CCACATCGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. |
Insights into corn genes derived from large-scale cDNA sequencing. |
Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. |