Gene Symbol | LOC100272509 |
Entrez Gene ID | 100272509 |
Full Name | Preprotein translocase subunit SCY2 chloroplastic |
Synonyms | GRMZM5G866861 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC100272509 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
NM_001146978.1 | NP_001140450.1 | uncharacterized protein LOC100272509 |
NM_001359733.1 | NP_001346662.1 | Preprotein translocase subunit SCY2 chloroplastic isoform 1 |
XM_008649272.2 | XP_008647494.1 | uncharacterized protein LOC100272509 isoform X1 |
NM_001146978.2 | NP_001140450.1 | Preprotein translocase subunit SCY2 chloroplastic isoform 2 |
The B73 maize genome: complexity, diversity, and dynamics.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK
Science (New York, N.Y.)326(5956)1112-5(2009 Nov)
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100272509 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100272509 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa16021 | |
Clone ID Related Accession (Same CDS sequence) | NM_001146978.1 , NM_001146978.2 | |
Accession Version | NM_001146978.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 843bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1514390400000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100272509 | |
Comment | Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BT038861.1. ##Evidence-Data-START## Transcript exon combination :: BT038861.1, SRR3147029.5019.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCAATGA CATGGATTTG TGACACCATT ACAGAATTTG GATTTGGACA TGGCTCATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001140450.1 |
CDS | 857..1699 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCAATGA CATGGATTTG TGACACCATT ACAGAATTTG GATTTGGACA TGGCTCATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa16021 | |
Clone ID Related Accession (Same CDS sequence) | NM_001146978.1 , NM_001146978.2 | |
Accession Version | NM_001146978.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 843bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1536595200000 | |
Organism | Zea mays | |
Product | Preprotein translocase subunit SCY2 chloroplastic isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT038861.1 and DR814031.1. On Feb 14, 2018 this sequence version replaced NM_001146978.1. Transcript Variant: This variant (2) has the short third intron due to splice donor choice. ##Evidence-Data-START## Transcript exon combination :: BT038861.1, SRR3147029.5019.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCAATGA CATGGATTTG TGACACCATT ACAGAATTTG GATTTGGACA TGGCTCATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001140450.1 |
CDS | 857..1699 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCAATGA CATGGATTTG TGACACCATT ACAGAATTTG GATTTGGACA TGGCTCATCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa25198 | |
Clone ID Related Accession (Same CDS sequence) | NM_001359733.1 , XM_008649272.2 | |
Accession Version | NM_001359733.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1575bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1536595200000 | |
Organism | Zea mays | |
Product | Preprotein translocase subunit SCY2 chloroplastic isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT083925.1. On Jan 13, 2018 this sequence version replaced XM_008649272.2. Transcript Variant: This variant (1) has the long third intron due to splice donor choice. ##Evidence-Data-START## Transcript exon combination :: BT083925.1, SRR3147029.13022.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCCCCCT CTCTCGTGCT GGTGCACTCA CTCCCGCTCC CTTCTCGCCG CGCGCTCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001346662.1 |
CDS | 95..1669 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCCCCT CTCTCGTGCT GGTGCACTCA CTCCCGCTCC CTTCTCGCCG CGCGCTCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa25198 | |
Clone ID Related Accession (Same CDS sequence) | NM_001359733.1 , XM_008649272.2 | |
Accession Version | XM_008649272.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1575bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100272509 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024464.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008649272.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCCCCT CTCTCGTGCT GGTGCACTCA CTCCCGCTCC CTTCTCGCCG CGCGCTCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008647494.1 |
CDS | 141..1715 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCCCCT CTCTCGTGCT GGTGCACTCA CTCCCGCTCC CTTCTCGCCG CGCGCTCCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The B73 maize genome: complexity, diversity, and dynamics. |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |