Gene Symbol | LOC100192541 |
Entrez Gene ID | 100192541 |
Full Name | Beta-16-galactosyltransferase GALT31A |
Synonyms | GRMZM2G144873 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC100192541 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
XM_008649105.1 | XP_008647327.1 | uncharacterized LOC100192541 isoform X2 |
NM_001137760.1 | NP_001131232.1 | uncharacterized protein LOC100192541 isoform 2 |
XM_008649106.2 | XP_008647328.1 | uncharacterized LOC100192541 isoform X3 |
NM_001347938.1 | NP_001334867.1 | uncharacterized protein LOC100192541 isoform 1 |
XM_008649103.1 | XP_008647325.1 | uncharacterized LOC100192541 isoform X1 |
The B73 maize genome: complexity, diversity, and dynamics.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK
Science (New York, N.Y.)326(5956)1112-5(2009 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100192541 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100192541 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa20965 | |
Clone ID Related Accession (Same CDS sequence) | NM_001137760.1 | |
Accession Version | NM_001137760.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 822bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1518364800000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100192541 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT034549.1. Transcript Variant: This variant (2) has multiple differences on both the 5' end and the 3' end. ##Evidence-Data-START## Transcript exon combination :: BT034549.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## NMD candidate :: translation inferred from conservation ##RefSeq-Attributes-END## |
1 | ATGGCGTTGG ACAAGACGAT ATCCGACATC GAGATGCGCC TGGCTGCGGC TAGAGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001131232.1 |
CDS | 561..1382 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCGTTGG ACAAGACGAT ATCCGACATC GAGATGCGCC TGGCTGCGGC TAGAGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa23457 | |
Clone ID Related Accession (Same CDS sequence) | NM_001347938.1 | |
Accession Version | NM_001347938.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1185bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1518364800000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100192541 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CO523075.1 and BT040311.1. On Dec 23, 2016 this sequence version replaced XM_008649104.1. Transcript Variant: This variant (1) has ten introns. ##Evidence-Data-START## Transcript exon combination :: BT040311.1, SRR3147034.6293.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209, SAMN08026701 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGATGGCCG CGGCGGCGCT GAGGCCGCAC AAGTCTTCGC CGGCGCGGGT GCCCACGCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001334867.1 |
CDS | 212..1396 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGATGGCCG CGGCGGCGCT GAGGCCGCAC AAGTCTTCGC CGGCGCGGGT GCCCACGCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa22096 | |
Clone ID Related Accession (Same CDS sequence) | XM_008649105.1 | |
Accession Version | XM_008649105.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1056bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized LOC100192541 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024464.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGTTGG ACAAGACGAT ATCCGACATC GAGATGCGCC TGGCTGCGGC TAGAGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008647327.1 |
CDS | 287..1342 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCGTTGG ACAAGACGAT ATCCGACATC GAGATGCGCC TGGCTGCGGC TAGAGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa23456 | |
Clone ID Related Accession (Same CDS sequence) | XM_008649103.1 | |
Accession Version | XM_008649103.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1275bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized LOC100192541 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024464.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATGGCCG CGGCGGCGCT GAGGCCGCAC AAGTCTTCGC CGGCGCGGGT GCCCACGCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008647325.1 |
CDS | 320..1594 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGATGGCCG CGGCGGCGCT GAGGCCGCAC AAGTCTTCGC CGGCGCGGGT GCCCACGCGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa23458 | |
Clone ID Related Accession (Same CDS sequence) | XM_008649106.2 | |
Accession Version | XM_008649106.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 966bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized LOC100192541 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024464.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008649106.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGTTGG ACAAGACGAT ATCCGACATC GAGATGCGCC TGGCTGCGGC TAGAGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008647328.1 |
CDS | 589..1554 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCGTTGG ACAAGACGAT ATCCGACATC GAGATGCGCC TGGCTGCGGC TAGAGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The B73 maize genome: complexity, diversity, and dynamics. |