Gene Symbol | LOC100193700 |
Entrez Gene ID | 100193700 |
Full Name | sugar transporter protein ERD6 |
Synonyms | GRMZM2G097768 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC100193700 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
NM_001138792.3 | NP_001132264.2 | uncharacterized protein LOC100193700 |
NM_001204251.2 | NP_001191180.1 | sugar transporter protein ERD6 isoform S |
XM_020541889.1 | XP_020397478.1 | sugar transporter protein ERD6 isoform X1 |
NM_001358133.1 | NP_001345062.1 | uncharacterized protein LOC100193700 |
The B73 maize genome: complexity, diversity, and dynamics.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK
Science (New York, N.Y.)326(5956)1112-5(2009 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100193700 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100193700 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa04143 | |
Clone ID Related Accession (Same CDS sequence) | NM_001204251.2 | |
Accession Version | NM_001204251.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1395bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1490976000000 | |
Organism | Zea mays | |
Product | sugar transporter protein ERD6 isoform S | |
Comment | VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT064122.1 and CO520691.1. On Apr 27, 2015 this sequence version replaced NM_001204251.1. Transcript Variant: This variant (2) lacks two alternate in-frame exons compared to variant 1. The encoded isoform (S) is shorter than isoform L. ##Evidence-Data-START## Transcript exon combination :: FJ750249.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGCTTCC GGGACCAGGA GAGTGGCGGG GAGGATGGGG GCAGGACGTC CTCCGCCTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001191180.1 |
CDS | 313..1707 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGCTTCC GGGACCAGGA GAGTGGCGGG GAGGATGGGG GCAGGACGTC CTCCGCCTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa04142 | |
Clone ID Related Accession (Same CDS sequence) | NM_001138792.3 , XM_020541889.1 , NM_001358133.1 | |
Accession Version | NM_001138792.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1521bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1552665600000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100193700 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT064122.1 and CO520691.1. On Apr 27, 2015 this sequence version replaced NM_001138792.2. Transcript Variant: This variant (1)has seventeen introns. ##Evidence-Data-START## Transcript exon combination :: BT064122.1, SRR3147047.15636.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGCTTCC GGGACCAGGA GAGTGGCGGG GAGGATGGGG GCAGGACGTC CTCCGCCTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001132264.2 |
CDS | 313..1833 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGCTTCC GGGACCAGGA GAGTGGCGGG GAGGATGGGG GCAGGACGTC CTCCGCCTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa04142 | |
Clone ID Related Accession (Same CDS sequence) | NM_001138792.3 , XM_020541889.1 , NM_001358133.1 | |
Accession Version | NM_001358133.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1521bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1552665600000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100193700 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CO520459.1, BQ528712.1 and BT036036.1. On Nov 22, 2017 this sequence version replaced XM_020541889.1. Transcript Variant: This variant (2) has an eighteen introns - one more in the 3' UTR. ##Evidence-Data-START## Transcript exon combination :: SRR3147029.4156.1, SRR3147041.2881.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01096209 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAGCTTCC GGGACCAGGA GAGTGGCGGG GAGGATGGGG GCAGGACGTC CTCCGCCTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001345062.1 |
CDS | 274..1794 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGCTTCC GGGACCAGGA GAGTGGCGGG GAGGATGGGG GCAGGACGTC CTCCGCCTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa04142 | |
Clone ID Related Accession (Same CDS sequence) | NM_001138792.3 , XM_020541889.1 , NM_001358133.1 | |
Accession Version | XM_020541889.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1521bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | sugar transporter protein ERD6 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024466.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCTTCC GGGACCAGGA GAGTGGCGGG GAGGATGGGG GCAGGACGTC CTCCGCCTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020397478.1 |
CDS | 339..1859 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGCTTCC GGGACCAGGA GAGTGGCGGG GAGGATGGGG GCAGGACGTC CTCCGCCTCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The B73 maize genome: complexity, diversity, and dynamics. |