ORF » Species Summary » Thalassiosira pseudonana CCMP1335 » THAPSDRAFT_20922 cDNA ORF clone

THAPSDRAFT_20922 cDNA ORF clone, Thalassiosira pseudonana CCMP1335

The following THAPSDRAFT_20922 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the THAPSDRAFT_20922 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

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OTf09123 XM_002286279.2
Latest version!		 Thalassiosira pseudonana CCMP1335 predicted protein partial mRNA. pcDNA3.1-C-(k)DYK or customized vector 19-21 $559.30
$799.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    THAPSDRAFT_20922 ( XM_002286279.2 ) cDNA ORF clone, Thalassiosira pseudonana CCMP1335 -> XP_002286315.1 Thalassiosira pseudonana CCMP1335 predicted protein partial mRNA.
    Price & Availability↑
    CloneID OTf09123
    Clone ID Related Accession (Same CDS sequence) XM_002286279.2
    Accession Version XM_002286279.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 3441bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1497456000000
    Organism Thalassiosira pseudonana CCMP1335
    Product predicted protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_012064). On Jun 16, 2017 this sequence version replaced XM_002286279.1. COMPLETENESS: incomplete on both ends. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    ATGTCAAACC CCTCCAGATC ACGCCGAGAG ATCCCTATGC AATGGGCGGC GACTCATCTG 
    CAAGTAGACG ACAATGAGCC AGTAGACCAC CGATCCTCCG CCTCCATCGG TGTCGGTGCA 
    CCCTCCTCTG CCTCTGCTTC CTCCTCGTAT CACACACACG GAGGCCTCTA CGATCTCGAC 
    ACCCTCGATG AACACCTCGT CACTCCCTCT GGTCCTTCGT CAAGTGCCTA CACTGCCGAC 
    ACGGAGCCTC GTATGGACAA CTTACGTTCA CTGAACAAAT CCAAGGCGAC ATTTAAAGAA 
    ATGCTACGTG CGGCTGACAC GGACGCTGCG AATCATGCTG CTAGGATGAG ACGCTTGAAT 
    GACTCTGATA CCAGTAATGC TGCCGGCAGA AGCGGTGGAA GGAAAAATAC GGCTGGTGAA 
    CAAGCCAACT CGTGGAGAGA ACGTATTGAT CGTCGTAAGA AGTGGGATGC CAAATCTCAA 
    TCGCTGCAAA ATGAAGCGGC CGCAATATTG AAGTTGTTTG ATACAACCTT GGCGAATGAA 
    AAGGGGGAGA CTCAGTCTGA GGTGGCGAAG GAAAGGATGG TGCGGTGGCA AAAAGCATTG 
    GATCTTTACG TGCATTGCCC TGAGGAGAGT GGAGTGGATT TGTTGAAGTT GTTGGAAAAG 
    TTGATTGAAG GATGCAGTGA GGAGGAGGAG CTTCTAGAAG CCCTCTCCCT AGCTTCTCAA 
    GCCTGCACCA ACCTCGTAGA CCAAACATCT CTCGCCGTTA AAGATGCCAC CGAAGCCATG 
    GCCGAGGCAG AAGATGCCTA TCACATTCGT CTCGAGGCAC ATACTCTCCT CGCCAACCGT 
    GCCGCCGATC AATCTGAAAA GATTGAAGAA CAATTCCGTA CCAATGGACG AGCAGCGTTG 
    AAGATCGGAC AACAGTTGGA GATGGCAGAG GCGAAGAAGC GACAATGTGA TCAGGCTTCG 
    TTGTTGATTC GTCAATGGTG GATGATGGAG AACTTGGCAG AACAGGAGGA AATGAGTGCG 
    GAGGTATTGC AGGTGGATGA AGAAGTGAGG GGAGTCATTC CGAGTTCGTC GTGTCGGATG 
    GACCCGTTGT TTACACTTCC GGAGAACAGT TTGGAGGCTG CACGGGCACT CAAGGCATTG 
    CGAACGGTGG TGAAGAGCAG GGGTAACTCG GCTAGTGGTG CATTGTTGGA TCCAGTGTCT 
    CGTCATCGCT TTGATGTCAC GAGTAAGCTG ATTCAACGTA CCTCGGTAGC TCTGGAGTCT 
    AGGTTGATCA ATTCCTTCTC TGAAATCTAT GTGGGCGGAG GAACGTATGA CTTTTCTTCT 
    CCTGATGGAG CAACGAGGCC GGGCAGGTTG AATTGGCTGG AGCTTCGTAA TTTGGCCATG 
    GCCTTGTCTC ACTTCGACGG GGGGCGAGGA CTTCACAAAC GTTATGTTCA GATGGTTGTT 
    ACATCTCGTT TCCCAGAACT TTTCCACGGT GCCAATGACT CTGATAACGA CAGTGATGAA 
    GATGATGATC ATCTTGATAT GGATAGTATG AGGCAAAAGC TGTCGAATCT CTTCCATCGC 
    GTATGCGAAG TGTGTACTGC GGAGTTTCAA CTTATTGCCA ACGTGTTTGC TTCTCCGTCA 
    ACCCTTGGTA AGGGAGGTGA TGCTATTTAC GACGTATCAT CGCTCTCGGA TGCAATTCCG 
    TTTCAAGTTG CTCGAGCCTT GCTTCAGCGT GTCATTAGTG ATCCTCGCAA CGGATTGCAG 
    GCTCGCATCA ACGATTTGCT TGATAGTATT GATAGAAGAG GTGACTTTGA CGCAGGAACA 
    AAGAAGTTAG ATACGTTTGT AGTCATTCAC GAGAAGGCAG CTGGTTTGTT CACGATGTTG 
    AAGGAGTCGG CACAGTCCAT GCTCTTGACT GCAAGCAAGG GTGGAATCAC TGAAGAAAAG 
    AGTTTGGAAG AATACCAAGC TGCAAGTGAG GACAATGCAC GAGCAGTTGC GTCACTCGTT 
    CAATTTTTGA CGACGCAGGA GATGTCTCTC AGCAGTAGCC ACCGTCGTGG ATATCTTAAT 
    CTTGAGCTAC GTCTTCTTCA TCATGAATGC TGCTACTGTC TGGACCGGAC GGGCGCCAAA 
    CTTGTCATGC CTAAACGTGG GGACAAGTCC AATGTTAATC GTCACAATAC TTTAATGGGT 
    GGCACTGCGG GGCTTGCTAC ATACGAGGCA CCTGCCATGC CTTTGGATAA ACAGCATTTG 
    AAGAAAGGTG GCTTCCAAGG TTTGTTGGGC GGTCCTCTCA AGCAGTCGGT ACTACGCCAG 
    CCGCTCATGC ATGCTACCGA TTCATTGGCA AGAGCACGTC TCATGTTTGG AGTGGGACAA 
    GGAGGCGTTG GAGATGTTGA TTCAACAGCT CGTGTCATCA CGGGAATCTT CTCCCAGATG 
    TGCACGTTTT ATGGCGACTC CTTTCTATTT CCAATCATTG AAGTATTGGG TGACTTGTTG 
    GACACCAATC CTCCTTCTGC TCCACCCAGC TTGCCGTTTG ATGAAAGTTC ACCTGCTCCT 
    GATCTAGGTG TGGATGGATC GTTTTGGGTA GGCATTGAAA GGATTCACTC TGCGGCCAAG 
    GCCTTTGATC GTGAGTTATG GGCTGAGCAA CGAAATGGCA GTGAGCGTGT GTGGGAAATC 
    CTCGTTGCAA CTGGGAGCCA CACTAGTCTG ACTCTCGCGA AAGATCAACG AATGGGCTTC 
    TTCCAGGAGT TGGAGGAACG GGGAGAGACT GCGATTTTAC GTGCACTTGA TACTCTCAGT 
    ACTCATATTC AGTGGTTGTT GGTTGCGGGG GGTGAACACA TGGCATCTGC TGGAAATCGA 
    CTCCTGAATA AGGACAAGAA TCAGGGCCCA TACGCTATCC CTGCAGGGTC ATCGCTTGAC 
    AATGCAAACA GCCCGGCAGT GAAATCTCTC ACGTTCTGCT TGAGAGCTCA GTTTGTTCAC 
    ATTCAAGCAG CACTCACTCC TCAGTCTCTG TCTGCATTCT GGACTGCTCT ATCAATGAGA 
    TTGTACGATA TTCTTGTGGC TAGGTTGCTT CAACACTATT ATGTGTCAAT GGTGGGCGCC 
    GTAAACTTAT CACGTGACGT CGAGGCACTC CGTTCAGTAG CAATGCTGGC TGGGACAGAC 
    CATGAACATT GGGACATGTT GAGAGAACTC CTCACTCTTT ACATGACACC ACCCAATGCT 
    CTGAAAACGA TTCTCGTTGG ACCAGAGGGA GATGCAAACT CTGGAAAAGG ATTGTTTGGT 
    CAGGCTGGAA AGGATCAAGC GTTGGTGTTC ATGAGTAGGC GTGTTGATTA CCGAGTGAAG 
    GTGAATCAAG TGTTGAAGAA GACAACGTGG GCTGTGGAGT TGTTGGAGGA TTTAGGAGTG 
    CCGGATCCTA CTGACTTTAC TGTCAATATT GCAATGTATT CAGCACAATC ATTGAGGAAC 
    AGACGTATGA AGATTAACTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002286315.1
    CDS1..3441
    Translation

    Target ORF information:

    RefSeq Version XM_002286279.2
    Organism Thalassiosira pseudonana CCMP1335
    Definition Thalassiosira pseudonana CCMP1335 predicted protein partial mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002286279.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    ATGTCAAACC CCTCCAGATC ACGCCGAGAG ATCCCTATGC AATGGGCGGC GACTCATCTG 
    CAAGTAGACG ACAATGAGCC AGTAGACCAC CGATCCTCCG CCTCCATCGG TGTCGGTGCA 
    CCCTCCTCTG CCTCTGCTTC CTCCTCGTAT CACACACACG GAGGCCTCTA CGATCTCGAC 
    ACCCTCGATG AACACCTCGT CACTCCCTCT GGTCCTTCGT CAAGTGCCTA CACTGCCGAC 
    ACGGAGCCTC GTATGGACAA CTTACGTTCA CTGAACAAAT CCAAGGCGAC ATTTAAAGAA 
    ATGCTACGTG CGGCTGACAC GGACGCTGCG AATCATGCTG CTAGGATGAG ACGCTTGAAT 
    GACTCTGATA CCAGTAATGC TGCCGGCAGA AGCGGTGGAA GGAAAAATAC GGCTGGTGAA 
    CAAGCCAACT CGTGGAGAGA ACGTATTGAT CGTCGTAAGA AGTGGGATGC CAAATCTCAA 
    TCGCTGCAAA ATGAAGCGGC CGCAATATTG AAGTTGTTTG ATACAACCTT GGCGAATGAA 
    AAGGGGGAGA CTCAGTCTGA GGTGGCGAAG GAAAGGATGG TGCGGTGGCA AAAAGCATTG 
    GATCTTTACG TGCATTGCCC TGAGGAGAGT GGAGTGGATT TGTTGAAGTT GTTGGAAAAG 
    TTGATTGAAG GATGCAGTGA GGAGGAGGAG CTTCTAGAAG CCCTCTCCCT AGCTTCTCAA 
    GCCTGCACCA ACCTCGTAGA CCAAACATCT CTCGCCGTTA AAGATGCCAC CGAAGCCATG 
    GCCGAGGCAG AAGATGCCTA TCACATTCGT CTCGAGGCAC ATACTCTCCT CGCCAACCGT 
    GCCGCCGATC AATCTGAAAA GATTGAAGAA CAATTCCGTA CCAATGGACG AGCAGCGTTG 
    AAGATCGGAC AACAGTTGGA GATGGCAGAG GCGAAGAAGC GACAATGTGA TCAGGCTTCG 
    TTGTTGATTC GTCAATGGTG GATGATGGAG AACTTGGCAG AACAGGAGGA AATGAGTGCG 
    GAGGTATTGC AGGTGGATGA AGAAGTGAGG GGAGTCATTC CGAGTTCGTC GTGTCGGATG 
    GACCCGTTGT TTACACTTCC GGAGAACAGT TTGGAGGCTG CACGGGCACT CAAGGCATTG 
    CGAACGGTGG TGAAGAGCAG GGGTAACTCG GCTAGTGGTG CATTGTTGGA TCCAGTGTCT 
    CGTCATCGCT TTGATGTCAC GAGTAAGCTG ATTCAACGTA CCTCGGTAGC TCTGGAGTCT 
    AGGTTGATCA ATTCCTTCTC TGAAATCTAT GTGGGCGGAG GAACGTATGA CTTTTCTTCT 
    CCTGATGGAG CAACGAGGCC GGGCAGGTTG AATTGGCTGG AGCTTCGTAA TTTGGCCATG 
    GCCTTGTCTC ACTTCGACGG GGGGCGAGGA CTTCACAAAC GTTATGTTCA GATGGTTGTT 
    ACATCTCGTT TCCCAGAACT TTTCCACGGT GCCAATGACT CTGATAACGA CAGTGATGAA 
    GATGATGATC ATCTTGATAT GGATAGTATG AGGCAAAAGC TGTCGAATCT CTTCCATCGC 
    GTATGCGAAG TGTGTACTGC GGAGTTTCAA CTTATTGCCA ACGTGTTTGC TTCTCCGTCA 
    ACCCTTGGTA AGGGAGGTGA TGCTATTTAC GACGTATCAT CGCTCTCGGA TGCAATTCCG 
    TTTCAAGTTG CTCGAGCCTT GCTTCAGCGT GTCATTAGTG ATCCTCGCAA CGGATTGCAG 
    GCTCGCATCA ACGATTTGCT TGATAGTATT GATAGAAGAG GTGACTTTGA CGCAGGAACA 
    AAGAAGTTAG ATACGTTTGT AGTCATTCAC GAGAAGGCAG CTGGTTTGTT CACGATGTTG 
    AAGGAGTCGG CACAGTCCAT GCTCTTGACT GCAAGCAAGG GTGGAATCAC TGAAGAAAAG 
    AGTTTGGAAG AATACCAAGC TGCAAGTGAG GACAATGCAC GAGCAGTTGC GTCACTCGTT 
    CAATTTTTGA CGACGCAGGA GATGTCTCTC AGCAGTAGCC ACCGTCGTGG ATATCTTAAT 
    CTTGAGCTAC GTCTTCTTCA TCATGAATGC TGCTACTGTC TGGACCGGAC GGGCGCCAAA 
    CTTGTCATGC CTAAACGTGG GGACAAGTCC AATGTTAATC GTCACAATAC TTTAATGGGT 
    GGCACTGCGG GGCTTGCTAC ATACGAGGCA CCTGCCATGC CTTTGGATAA ACAGCATTTG 
    AAGAAAGGTG GCTTCCAAGG TTTGTTGGGC GGTCCTCTCA AGCAGTCGGT ACTACGCCAG 
    CCGCTCATGC ATGCTACCGA TTCATTGGCA AGAGCACGTC TCATGTTTGG AGTGGGACAA 
    GGAGGCGTTG GAGATGTTGA TTCAACAGCT CGTGTCATCA CGGGAATCTT CTCCCAGATG 
    TGCACGTTTT ATGGCGACTC CTTTCTATTT CCAATCATTG AAGTATTGGG TGACTTGTTG 
    GACACCAATC CTCCTTCTGC TCCACCCAGC TTGCCGTTTG ATGAAAGTTC ACCTGCTCCT 
    GATCTAGGTG TGGATGGATC GTTTTGGGTA GGCATTGAAA GGATTCACTC TGCGGCCAAG 
    GCCTTTGATC GTGAGTTATG GGCTGAGCAA CGAAATGGCA GTGAGCGTGT GTGGGAAATC 
    CTCGTTGCAA CTGGGAGCCA CACTAGTCTG ACTCTCGCGA AAGATCAACG AATGGGCTTC 
    TTCCAGGAGT TGGAGGAACG GGGAGAGACT GCGATTTTAC GTGCACTTGA TACTCTCAGT 
    ACTCATATTC AGTGGTTGTT GGTTGCGGGG GGTGAACACA TGGCATCTGC TGGAAATCGA 
    CTCCTGAATA AGGACAAGAA TCAGGGCCCA TACGCTATCC CTGCAGGGTC ATCGCTTGAC 
    AATGCAAACA GCCCGGCAGT GAAATCTCTC ACGTTCTGCT TGAGAGCTCA GTTTGTTCAC 
    ATTCAAGCAG CACTCACTCC TCAGTCTCTG TCTGCATTCT GGACTGCTCT ATCAATGAGA 
    TTGTACGATA TTCTTGTGGC TAGGTTGCTT CAACACTATT ATGTGTCAAT GGTGGGCGCC 
    GTAAACTTAT CACGTGACGT CGAGGCACTC CGTTCAGTAG CAATGCTGGC TGGGACAGAC 
    CATGAACATT GGGACATGTT GAGAGAACTC CTCACTCTTT ACATGACACC ACCCAATGCT 
    CTGAAAACGA TTCTCGTTGG ACCAGAGGGA GATGCAAACT CTGGAAAAGG ATTGTTTGGT 
    CAGGCTGGAA AGGATCAAGC GTTGGTGTTC ATGAGTAGGC GTGTTGATTA CCGAGTGAAG 
    GTGAATCAAG TGTTGAAGAA GACAACGTGG GCTGTGGAGT TGTTGGAGGA TTTAGGAGTG 
    CCGGATCCTA CTGACTTTAC TGTCAATATT GCAATGTATT CAGCACAATC ATTGAGGAAC 
    AGACGTATGA AGATTAACTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The Phaeodactylum genome reveals the evolutionary history of diatom genomes.
    Nature456(7219)239-44(2008 Nov)
    Bowler C,Allen AE,Badger JH,Grimwood J,Jabbari K,Kuo A,Maheswari U,Martens C,Maumus F,Otillar RP,Rayko E,Salamov A,Vandepoele K,Beszteri B,Gruber A,Heijde M,Katinka M,Mock T,Valentin K,Verret F,Berges JA,Brownlee C,Cadoret JP,Chiovitti A,Choi CJ,Coesel S,De Martino A,Detter JC,Durkin C,Falciatore A,Fournet J,Haruta M,Huysman MJ,Jenkins BD,Jiroutova K,Jorgensen RE,Joubert Y,Kaplan A,Kröger N,Kroth PG,La Roche J,Lindquist E,Lommer M,Martin-Jézéquel V,Lopez PJ,Lucas S,Mangogna M,McGinnis K,Medlin LK,Montsant A,Oudot-Le Secq MP,Napoli C,Obornik M,Parker MS,Petit JL,Porcel BM,Poulsen N,Robison M,Rychlewski L,Rynearson TA,Schmutz J,Shapiro H,Siaut M,Stanley M,Sussman MR,Taylor AR,Vardi A,von Dassow P,Vyverman W,Willis A,Wyrwicz LS,Rokhsar DS,Weissenbach J,Armbrust EV,Green BR,Van de Peer Y,Grigoriev IV


    The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism.
    Science (New York, N.Y.)306(5693)79-86(2004 Oct)
    Armbrust EV,Berges JA,Bowler C,Green BR,Martinez D,Putnam NH,Zhou S,Allen AE,Apt KE,Bechner M,Brzezinski MA,Chaal BK,Chiovitti A,Davis AK,Demarest MS,Detter JC,Glavina T,Goodstein D,Hadi MZ,Hellsten U,Hildebrand M,Jenkins BD,Jurka J,Kapitonov VV,Kröger N,Lau WW,Lane TW,Larimer FW,Lippmeier JC,Lucas S,Medina M,Montsant A,Obornik M,Parker MS,Palenik B,Pazour GJ,Richardson PM,Rynearson TA,Saito MA,Schwartz DC,Thamatrakoln K,Valentin K,Vardi A,Wilkerson FP,Rokhsar DS


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