ORF » Species Summary » Populus trichocarpa » POPTR_0001s04800g cDNA ORF clone

POPTR_0001s04800g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

The following POPTR_0001s04800g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0001s04800g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa00022 XM_006368484.1
Latest version!		 Populus trichocarpa hypothetical protein (POPTR_0001s04800g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OPa00023 XM_002297618.1
Latest version!		 Populus trichocarpa 10-formyltetrahydrofolate synthetase family protein (POPTR_0001s04800g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OPa422744 XM_002297618.2
Latest version!		 Populus trichocarpa formate--tetrahydrofolate ligase (LOC7455752), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OPa422745 XM_024589804.1
Latest version!		 Populus trichocarpa formate--tetrahydrofolate ligase (LOC7455752), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    POPTR_0001s04800g ( XM_006368484.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_006368546.1 Populus trichocarpa hypothetical protein (POPTR_0001s04800g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa00022
    Clone ID Related Accession (Same CDS sequence) XM_006368484.1
    Accession Version XM_006368484.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1536bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008467). 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGAGTGCAT CAAAAACGTT GAGGAAGTTG GAGGTGGTGT CACCAGTACC AGCTGACATA 
    GACATTGCTA ACTCAGTGGA ACCTTTTCAC ATATCTGAGA TTGCTAAAGA GCTGAATCTT 
    AGCCCTAAAC ATTATGATCT TTATGGAAAA TACAAGGCCA AGGTATTATT GCCTGTGCTT 
    GATGAGCTTG AAGGATCAGG AGATGGGTAC TATGTGGTGG TTGGAGGGAT TACTCCTACA 
    CCACTTGGAG AAGGAAAGTC CACTACTACT GTTGGCCTCT GTCAGGCTAT GGGTGCATTT 
    CTTGATAAAA AGGTTGCTAC CTGCCTTCGT CAACCATCAC AAGGACCGAC TTTTGGAATA 
    AAAGGGGGTG CAGCTGGTGG TGGTTATAGT CAAGTTATTC CAATGGATGA ATTCAATCTT 
    CACCTAACAG GAGATATTCA TGCAATAACA GCTGCAAATA ATCTCCTAGC AGCTGCTATT 
    GATACCCGGA TTTTCCATGA GTCTACACAA TCAGACAAGG CTCTTTTAAA CCGCTTATGC 
    CCACCGAACA AAGAAGGAAA ACGAAGCTTT AGTGACATAA TGTTTCGGCG TCTGAAGAGG 
    CTTGGTATCT CCAAGACCAA GCCTGAGGAA CTCACACCAC AAGAAGTAAA AAAATTTGCA 
    AGGCTTGATA TTGACCCAGC TTCGATAACA TGGAGGAGAG TAATGGATGT CAATGACAGG 
    TTTTTGAGAA AGATTACTGT TGGACAAGGT CCTGAAGAAA AAGGGATGGT GAGAGAAACA 
    GGATTTGATA TATCTGTAGC TAGTGAGATA ATGGCAGTTT TGGCCCTCAC AACATCTCTA 
    GCTGATATGA GAGAGAGGCT TGGTAAAATG GTGATTGGCA ATAGCAAGGC CGGGGACCCT 
    GTGACAGCTG ATGATCTTGG TGTTGGAGGT GCCTTGACTG TACTGATGAA GGATGCTATC 
    AACCCTACTT TAATGCAGAC TCTTGAAGGA ACTCCTGTTC TTGTTCATGC TGGTCCTTTT 
    GCGAACATTG CTCATGGAAA TTCTTCCATC GTGGCCGATA AGATTGCACT GAAGCTGGTG 
    GGACCGGGTG GGTTTGTGGT CACAGAAGCA GGTTTTGGTT CTGATATTGG AACTGAAAAG 
    TTCATGAACA TAAAGTGCCG ATACAGCGGT TTGACTCCTC AGTGTGCTGT TATTGTTGCA 
    ACAATTAGGG CCCTGAAAAT GCATGGTGGT GGGCCAGAAG TGGTTGCTGG GAAGCCTCTT 
    GACCGTGCCT ACACAACTGA GAATGTGTCT TTGGTTGAAG CCGGTTGTGT GAATTTAGCT 
    AGGCATATTT CTAACACCAA GGCTTATGGT GTAAATGTTG TTGTTGCTGT GAACATGTTT 
    GCAACTGATT CAGAAGCAGA ACTTAATGCT GTCAGAAATG CAGCTTTGAC TGCTGGGGCA 
    TATGATGCTG TTGTCTGTAC ACACCATGCT CATGGTGGGA AAGGAGCAGT AAGTTGCTTC 
    TTCCTGTTTG TCCATTCCCA TACTGAACCA GGATGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006368546.1
    CDS55..1590
    Translation

    Target ORF information:

    RefSeq Version XM_006368484.1
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0001s04800g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006368484.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGAGTGCAT CAAAAACGTT GAGGAAGTTG GAGGTGGTGT CACCAGTACC AGCTGACATA 
    GACATTGCTA ACTCAGTGGA ACCTTTTCAC ATATCTGAGA TTGCTAAAGA GCTGAATCTT 
    AGCCCTAAAC ATTATGATCT TTATGGAAAA TACAAGGCCA AGGTATTATT GCCTGTGCTT 
    GATGAGCTTG AAGGATCAGG AGATGGGTAC TATGTGGTGG TTGGAGGGAT TACTCCTACA 
    CCACTTGGAG AAGGAAAGTC CACTACTACT GTTGGCCTCT GTCAGGCTAT GGGTGCATTT 
    CTTGATAAAA AGGTTGCTAC CTGCCTTCGT CAACCATCAC AAGGACCGAC TTTTGGAATA 
    AAAGGGGGTG CAGCTGGTGG TGGTTATAGT CAAGTTATTC CAATGGATGA ATTCAATCTT 
    CACCTAACAG GAGATATTCA TGCAATAACA GCTGCAAATA ATCTCCTAGC AGCTGCTATT 
    GATACCCGGA TTTTCCATGA GTCTACACAA TCAGACAAGG CTCTTTTAAA CCGCTTATGC 
    CCACCGAACA AAGAAGGAAA ACGAAGCTTT AGTGACATAA TGTTTCGGCG TCTGAAGAGG 
    CTTGGTATCT CCAAGACCAA GCCTGAGGAA CTCACACCAC AAGAAGTAAA AAAATTTGCA 
    AGGCTTGATA TTGACCCAGC TTCGATAACA TGGAGGAGAG TAATGGATGT CAATGACAGG 
    TTTTTGAGAA AGATTACTGT TGGACAAGGT CCTGAAGAAA AAGGGATGGT GAGAGAAACA 
    GGATTTGATA TATCTGTAGC TAGTGAGATA ATGGCAGTTT TGGCCCTCAC AACATCTCTA 
    GCTGATATGA GAGAGAGGCT TGGTAAAATG GTGATTGGCA ATAGCAAGGC CGGGGACCCT 
    GTGACAGCTG ATGATCTTGG TGTTGGAGGT GCCTTGACTG TACTGATGAA GGATGCTATC 
    AACCCTACTT TAATGCAGAC TCTTGAAGGA ACTCCTGTTC TTGTTCATGC TGGTCCTTTT 
    GCGAACATTG CTCATGGAAA TTCTTCCATC GTGGCCGATA AGATTGCACT GAAGCTGGTG 
    GGACCGGGTG GGTTTGTGGT CACAGAAGCA GGTTTTGGTT CTGATATTGG AACTGAAAAG 
    TTCATGAACA TAAAGTGCCG ATACAGCGGT TTGACTCCTC AGTGTGCTGT TATTGTTGCA 
    ACAATTAGGG CCCTGAAAAT GCATGGTGGT GGGCCAGAAG TGGTTGCTGG GAAGCCTCTT 
    GACCGTGCCT ACACAACTGA GAATGTGTCT TTGGTTGAAG CCGGTTGTGT GAATTTAGCT 
    AGGCATATTT CTAACACCAA GGCTTATGGT GTAAATGTTG TTGTTGCTGT GAACATGTTT 
    GCAACTGATT CAGAAGCAGA ACTTAATGCT GTCAGAAATG CAGCTTTGAC TGCTGGGGCA 
    TATGATGCTG TTGTCTGTAC ACACCATGCT CATGGTGGGA AAGGAGCAGT AAGTTGCTTC 
    TTCCTGTTTG TCCATTCCCA TACTGAACCA GGATGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0001s04800g ( XM_002297618.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_002297654.1 Populus trichocarpa 10-formyltetrahydrofolate synthetase family protein (POPTR_0001s04800g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa00023
    Clone ID Related Accession (Same CDS sequence) XM_002297618.1
    Accession Version XM_002297618.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1911bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product 10-formyltetrahydrofolate synthetase family protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008467). 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAGTGCAT CAAAAACGTT GAGGAAGTTG GAGGTGGTGT CACCAGTACC AGCTGACATA 
    GACATTGCTA ACTCAGTGGA ACCTTTTCAC ATATCTGAGA TTGCTAAAGA GCTGAATCTT 
    AGCCCTAAAC ATTATGATCT TTATGGAAAA TACAAGGCCA AGGTATTATT GCCTGTGCTT 
    GATGAGCTTG AAGGATCAGG AGATGGGTAC TATGTGGTGG TTGGAGGGAT TACTCCTACA 
    CCACTTGGAG AAGGAAAGTC CACTACTACT GTTGGCCTCT GTCAGGCTAT GGGTGCATTT 
    CTTGATAAAA AGGTTGCTAC CTGCCTTCGT CAACCATCAC AAGGACCGAC TTTTGGAATA 
    AAAGGGGGTG CAGCTGGTGG TGGTTATAGT CAAGTTATTC CAATGGATGA ATTCAATCTT 
    CACCTAACAG GAGATATTCA TGCAATAACA GCTGCAAATA ATCTCCTAGC AGCTGCTATT 
    GATACCCGGA TTTTCCATGA GTCTACACAA TCAGACAAGG CTCTTTTAAA CCGCTTATGC 
    CCACCGAACA AAGAAGGAAA ACGAAGCTTT AGTGACATAA TGTTTCGGCG TCTGAAGAGG 
    CTTGGTATCT CCAAGACCAA GCCTGAGGAA CTCACACCAC AAGAAGTAAA AAAATTTGCA 
    AGGCTTGATA TTGACCCAGC TTCGATAACA TGGAGGAGAG TAATGGATGT CAATGACAGG 
    TTTTTGAGAA AGATTACTGT TGGACAAGGT CCTGAAGAAA AAGGGATGGT GAGAGAAACA 
    GGATTTGATA TATCTGTAGC TAGTGAGATA ATGGCAGTTT TGGCCCTCAC AACATCTCTA 
    GCTGATATGA GAGAGAGGCT TGGTAAAATG GTGATTGGCA ATAGCAAGGC CGGGGACCCT 
    GTGACAGCTG ATGATCTTGG TGTTGGAGGT GCCTTGACTG TACTGATGAA GGATGCTATC 
    AACCCTACTT TAATGCAGAC TCTTGAAGGA ACTCCTGTTC TTGTTCATGC TGGTCCTTTT 
    GCGAACATTG CTCATGGAAA TTCTTCCATC GTGGCCGATA AGATTGCACT GAAGCTGGTG 
    GGACCGGGTG GGTTTGTGGT CACAGAAGCA GGTTTTGGTT CTGATATTGG AACTGAAAAG 
    TTCATGAACA TAAAGTGCCG ATACAGCGGT TTGACTCCTC AGTGTGCTGT TATTGTTGCA 
    ACAATTAGGG CCCTGAAAAT GCATGGTGGT GGGCCAGAAG TGGTTGCTGG GAAGCCTCTT 
    GACCGTGCCT ACACAACTGA GAATGTGTCT TTGGTTGAAG CCGGTTGTGT GAATTTAGCT 
    AGGCATATTT CTAACACCAA GGCTTATGGT GTAAATGTTG TTGTTGCTGT GAACATGTTT 
    GCAACTGATT CAGAAGCAGA ACTTAATGCT GTCAGAAATG CAGCTTTGAC TGCTGGGGCA 
    TATGATGCTG TTGTCTGTAC ACACCATGCT CATGGTGGGA AAGGAGCAGT GGAACTTGGA 
    ATTGCAGTTC AAAAGGCATG TGGGAATGTG ACACAGCCAT TAAAGTTTTT ATATTCCTTG 
    GACATTAGTA TTAAAGAGAA AATAGAGGCA ATAGCAAGGT CATATGGTGC TAGTGGTGTC 
    GAATACTCAG AGCAGGCTGA GAAACAAATT GAGATGTACA GCAGGCAAGG GTTCTCTGGT 
    CTGCCGATCT GCATGGCTAA AACCCAGTAT TCATTTTCAC ACCAAGCGTC TGAGAAAGGA 
    GCCCCCACTG GATTTGTTTT GCCAATAAGA GATGTCAGGG CTAGCATCGG TGCTGGTTTC 
    ATCTATCCTT TGGTTGGGAC TATGAGTACC ATGCCAGGAC TTCCAACAAG GCCTTGCTTT 
    TATGACATTG ATCTGGACAC TGCCACCGGC AAGGTTATTG GTCTCTCTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002297654.1
    CDS55..1965
    Translation

    Target ORF information:

    RefSeq Version XM_002297618.1
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa 10-formyltetrahydrofolate synthetase family protein (POPTR_0001s04800g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002297618.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAGTGCAT CAAAAACGTT GAGGAAGTTG GAGGTGGTGT CACCAGTACC AGCTGACATA 
    GACATTGCTA ACTCAGTGGA ACCTTTTCAC ATATCTGAGA TTGCTAAAGA GCTGAATCTT 
    AGCCCTAAAC ATTATGATCT TTATGGAAAA TACAAGGCCA AGGTATTATT GCCTGTGCTT 
    GATGAGCTTG AAGGATCAGG AGATGGGTAC TATGTGGTGG TTGGAGGGAT TACTCCTACA 
    CCACTTGGAG AAGGAAAGTC CACTACTACT GTTGGCCTCT GTCAGGCTAT GGGTGCATTT 
    CTTGATAAAA AGGTTGCTAC CTGCCTTCGT CAACCATCAC AAGGACCGAC TTTTGGAATA 
    AAAGGGGGTG CAGCTGGTGG TGGTTATAGT CAAGTTATTC CAATGGATGA ATTCAATCTT 
    CACCTAACAG GAGATATTCA TGCAATAACA GCTGCAAATA ATCTCCTAGC AGCTGCTATT 
    GATACCCGGA TTTTCCATGA GTCTACACAA TCAGACAAGG CTCTTTTAAA CCGCTTATGC 
    CCACCGAACA AAGAAGGAAA ACGAAGCTTT AGTGACATAA TGTTTCGGCG TCTGAAGAGG 
    CTTGGTATCT CCAAGACCAA GCCTGAGGAA CTCACACCAC AAGAAGTAAA AAAATTTGCA 
    AGGCTTGATA TTGACCCAGC TTCGATAACA TGGAGGAGAG TAATGGATGT CAATGACAGG 
    TTTTTGAGAA AGATTACTGT TGGACAAGGT CCTGAAGAAA AAGGGATGGT GAGAGAAACA 
    GGATTTGATA TATCTGTAGC TAGTGAGATA ATGGCAGTTT TGGCCCTCAC AACATCTCTA 
    GCTGATATGA GAGAGAGGCT TGGTAAAATG GTGATTGGCA ATAGCAAGGC CGGGGACCCT 
    GTGACAGCTG ATGATCTTGG TGTTGGAGGT GCCTTGACTG TACTGATGAA GGATGCTATC 
    AACCCTACTT TAATGCAGAC TCTTGAAGGA ACTCCTGTTC TTGTTCATGC TGGTCCTTTT 
    GCGAACATTG CTCATGGAAA TTCTTCCATC GTGGCCGATA AGATTGCACT GAAGCTGGTG 
    GGACCGGGTG GGTTTGTGGT CACAGAAGCA GGTTTTGGTT CTGATATTGG AACTGAAAAG 
    TTCATGAACA TAAAGTGCCG ATACAGCGGT TTGACTCCTC AGTGTGCTGT TATTGTTGCA 
    ACAATTAGGG CCCTGAAAAT GCATGGTGGT GGGCCAGAAG TGGTTGCTGG GAAGCCTCTT 
    GACCGTGCCT ACACAACTGA GAATGTGTCT TTGGTTGAAG CCGGTTGTGT GAATTTAGCT 
    AGGCATATTT CTAACACCAA GGCTTATGGT GTAAATGTTG TTGTTGCTGT GAACATGTTT 
    GCAACTGATT CAGAAGCAGA ACTTAATGCT GTCAGAAATG CAGCTTTGAC TGCTGGGGCA 
    TATGATGCTG TTGTCTGTAC ACACCATGCT CATGGTGGGA AAGGAGCAGT GGAACTTGGA 
    ATTGCAGTTC AAAAGGCATG TGGGAATGTG ACACAGCCAT TAAAGTTTTT ATATTCCTTG 
    GACATTAGTA TTAAAGAGAA AATAGAGGCA ATAGCAAGGT CATATGGTGC TAGTGGTGTC 
    GAATACTCAG AGCAGGCTGA GAAACAAATT GAGATGTACA GCAGGCAAGG GTTCTCTGGT 
    CTGCCGATCT GCATGGCTAA AACCCAGTAT TCATTTTCAC ACCAAGCGTC TGAGAAAGGA 
    GCCCCCACTG GATTTGTTTT GCCAATAAGA GATGTCAGGG CTAGCATCGG TGCTGGTTTC 
    ATCTATCCTT TGGTTGGGAC TATGAGTACC ATGCCAGGAC TTCCAACAAG GCCTTGCTTT 
    TATGACATTG ATCTGGACAC TGCCACCGGC AAGGTTATTG GTCTCTCTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0001s04800g ( XM_002297618.2 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_002297654.1 Populus trichocarpa formate--tetrahydrofolate ligase (LOC7455752), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID OPa422744
    Clone ID Related Accession (Same CDS sequence) XM_002297618.2
    Accession Version XM_002297618.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1911bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product formate--tetrahydrofolate ligase isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037285.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002297618.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAGTGCAT CAAAAACGTT GAGGAAGTTG GAGGTGGTGT CACCAGTACC AGCTGACATA 
    GACATTGCTA ACTCAGTGGA ACCTTTTCAC ATATCTGAGA TTGCTAAAGA GCTGAATCTT 
    AGCCCTAAAC ATTATGATCT TTATGGAAAA TACAAGGCCA AGGTATTATT GCCTGTGCTT 
    GATGAGCTTG AAGGATCAGG AGATGGGTAC TATGTGGTGG TTGGAGGGAT TACTCCTACA 
    CCACTTGGAG AAGGAAAGTC CACTACTACT GTTGGCCTCT GTCAGGCTAT GGGTGCATTT 
    CTTGATAAAA AGGTTGCTAC CTGCCTTCGT CAACCATCAC AAGGACCGAC TTTTGGAATA 
    AAAGGGGGTG CAGCTGGTGG TGGTTATAGT CAAGTTATTC CAATGGATGA ATTCAATCTT 
    CACCTAACAG GAGATATTCA TGCAATAACA GCTGCAAATA ATCTCCTAGC AGCTGCTATT 
    GATACCCGGA TTTTCCATGA GTCTACACAA TCAGACAAGG CTCTTTTAAA CCGCTTATGC 
    CCACCGAACA AAGAAGGAAA ACGAAGCTTT AGTGACATAA TGTTTCGGCG TCTGAAGAGG 
    CTTGGTATCT CCAAGACCAA GCCTGAGGAA CTCACACCAC AAGAAGTAAA AAAATTTGCA 
    AGGCTTGATA TTGACCCAGC TTCGATAACA TGGAGGAGAG TAATGGATGT CAATGACAGG 
    TTTTTGAGAA AGATTACTGT TGGACAAGGT CCTGAAGAAA AAGGGATGGT GAGAGAAACA 
    GGATTTGATA TATCTGTAGC TAGTGAGATA ATGGCAGTTT TGGCCCTCAC AACATCTCTA 
    GCTGATATGA GAGAGAGGCT TGGTAAAATG GTGATTGGCA ATAGCAAGGC CGGGGACCCT 
    GTGACAGCTG ATGATCTTGG TGTTGGAGGT GCCTTGACTG TACTGATGAA GGATGCTATC 
    AACCCTACTT TAATGCAGAC TCTTGAAGGA ACTCCTGTTC TTGTTCATGC TGGTCCTTTT 
    GCGAACATTG CTCATGGAAA TTCTTCCATC GTGGCCGATA AGATTGCACT GAAGCTGGTG 
    GGACCGGGTG GGTTTGTGGT CACAGAAGCA GGTTTTGGTT CTGATATTGG AACTGAAAAG 
    TTCATGAACA TAAAGTGCCG ATACAGCGGT TTGACTCCTC AGTGTGCTGT TATTGTTGCA 
    ACAATTAGGG CCCTCAAGAT GCATGGTGGT GGGCCAGAAG TGGTTGCTGG GAAGCCTCTT 
    GACCGTGCCT ACACAACTGA GAATGTGTCT TTGGTTGAAG CCGGTTGTGT GAATTTAGCT 
    AGGCATATTT CTAACACCAA GGCTTATGGT GTAAATGTTG TTGTTGCTGT GAACATGTTT 
    GCAACTGATT CAGAAGCAGA ACTTAATGCT GTCAGAAATG CAGCTTTGAC TGCTGGGGCA 
    TATGATGCTG TTGTCTGTAC ACACCATGCT CATGGTGGGA AAGGAGCAGT GGAACTTGGA 
    ATTGCAGTTC AAAAGGCATG TGGGAATGTG ACACAGCCAT TAAAGTTTTT ATATTCCTTG 
    GACATTAGTA TTAAAGAGAA AATAGAGGCA ATAGCAAGGT CATATGGTGC TAGTGGTGTC 
    GAATACTCAG AGCAGGCTGA GAAACAAATT GAGATGTACA GCAGGCAAGG GTTCTCTGGT 
    CTGCCGATCT GCATGGCTAA AACCCAGTAT TCATTTTCAC ACCAAGCGTC TGAGAAAGGA 
    GCCCCCACCG GATTTGTTTT GCCAATAAGA GATGTCAGGG CTAGCATCGG TGCTGGTTTC 
    ATCTATCCTT TGGTTGGGAC TATGAGTACC ATGCCAGGAC TTCCAACAAG GCCTTGCTTT 
    TATGACATTG ATCTGGACAC TGCCACCGGC AAGGTTATTG GTCTCTCTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002297654.1
    CDS130..2040
    Translation

    Target ORF information:

    RefSeq Version XM_002297618.2
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa formate--tetrahydrofolate ligase (LOC7455752), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002297618.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAGTGCAT CAAAAACGTT GAGGAAGTTG GAGGTGGTGT CACCAGTACC AGCTGACATA 
    GACATTGCTA ACTCAGTGGA ACCTTTTCAC ATATCTGAGA TTGCTAAAGA GCTGAATCTT 
    AGCCCTAAAC ATTATGATCT TTATGGAAAA TACAAGGCCA AGGTATTATT GCCTGTGCTT 
    GATGAGCTTG AAGGATCAGG AGATGGGTAC TATGTGGTGG TTGGAGGGAT TACTCCTACA 
    CCACTTGGAG AAGGAAAGTC CACTACTACT GTTGGCCTCT GTCAGGCTAT GGGTGCATTT 
    CTTGATAAAA AGGTTGCTAC CTGCCTTCGT CAACCATCAC AAGGACCGAC TTTTGGAATA 
    AAAGGGGGTG CAGCTGGTGG TGGTTATAGT CAAGTTATTC CAATGGATGA ATTCAATCTT 
    CACCTAACAG GAGATATTCA TGCAATAACA GCTGCAAATA ATCTCCTAGC AGCTGCTATT 
    GATACCCGGA TTTTCCATGA GTCTACACAA TCAGACAAGG CTCTTTTAAA CCGCTTATGC 
    CCACCGAACA AAGAAGGAAA ACGAAGCTTT AGTGACATAA TGTTTCGGCG TCTGAAGAGG 
    CTTGGTATCT CCAAGACCAA GCCTGAGGAA CTCACACCAC AAGAAGTAAA AAAATTTGCA 
    AGGCTTGATA TTGACCCAGC TTCGATAACA TGGAGGAGAG TAATGGATGT CAATGACAGG 
    TTTTTGAGAA AGATTACTGT TGGACAAGGT CCTGAAGAAA AAGGGATGGT GAGAGAAACA 
    GGATTTGATA TATCTGTAGC TAGTGAGATA ATGGCAGTTT TGGCCCTCAC AACATCTCTA 
    GCTGATATGA GAGAGAGGCT TGGTAAAATG GTGATTGGCA ATAGCAAGGC CGGGGACCCT 
    GTGACAGCTG ATGATCTTGG TGTTGGAGGT GCCTTGACTG TACTGATGAA GGATGCTATC 
    AACCCTACTT TAATGCAGAC TCTTGAAGGA ACTCCTGTTC TTGTTCATGC TGGTCCTTTT 
    GCGAACATTG CTCATGGAAA TTCTTCCATC GTGGCCGATA AGATTGCACT GAAGCTGGTG 
    GGACCGGGTG GGTTTGTGGT CACAGAAGCA GGTTTTGGTT CTGATATTGG AACTGAAAAG 
    TTCATGAACA TAAAGTGCCG ATACAGCGGT TTGACTCCTC AGTGTGCTGT TATTGTTGCA 
    ACAATTAGGG CCCTCAAGAT GCATGGTGGT GGGCCAGAAG TGGTTGCTGG GAAGCCTCTT 
    GACCGTGCCT ACACAACTGA GAATGTGTCT TTGGTTGAAG CCGGTTGTGT GAATTTAGCT 
    AGGCATATTT CTAACACCAA GGCTTATGGT GTAAATGTTG TTGTTGCTGT GAACATGTTT 
    GCAACTGATT CAGAAGCAGA ACTTAATGCT GTCAGAAATG CAGCTTTGAC TGCTGGGGCA 
    TATGATGCTG TTGTCTGTAC ACACCATGCT CATGGTGGGA AAGGAGCAGT GGAACTTGGA 
    ATTGCAGTTC AAAAGGCATG TGGGAATGTG ACACAGCCAT TAAAGTTTTT ATATTCCTTG 
    GACATTAGTA TTAAAGAGAA AATAGAGGCA ATAGCAAGGT CATATGGTGC TAGTGGTGTC 
    GAATACTCAG AGCAGGCTGA GAAACAAATT GAGATGTACA GCAGGCAAGG GTTCTCTGGT 
    CTGCCGATCT GCATGGCTAA AACCCAGTAT TCATTTTCAC ACCAAGCGTC TGAGAAAGGA 
    GCCCCCACCG GATTTGTTTT GCCAATAAGA GATGTCAGGG CTAGCATCGG TGCTGGTTTC 
    ATCTATCCTT TGGTTGGGAC TATGAGTACC ATGCCAGGAC TTCCAACAAG GCCTTGCTTT 
    TATGACATTG ATCTGGACAC TGCCACCGGC AAGGTTATTG GTCTCTCTTA A

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0001s04800g ( XM_024589804.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_024445572.1 Populus trichocarpa formate--tetrahydrofolate ligase (LOC7455752), transcript variant X2, mRNA.
    Price & Availability↑
    CloneID OPa422745
    Clone ID Related Accession (Same CDS sequence) XM_024589804.1
    Accession Version XM_024589804.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1608bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product formate--tetrahydrofolate ligase isoform X2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037285.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    ATGTCAGTGG TTGCTACCTG CCTTCGTCAA CCATCACAAG GACCGACTTT TGGAATAAAA 
    GGGGGTGCAG CTGGTGGTGG TTATAGTCAA GTTATTCCAA TGGATGAATT CAATCTTCAC 
    CTAACAGGAG ATATTCATGC AATAACAGCT GCAAATAATC TCCTAGCAGC TGCTATTGAT 
    ACCCGGATTT TCCATGAGTC TACACAATCA GACAAGGCTC TTTTAAACCG CTTATGCCCA 
    CCGAACAAAG AAGGAAAACG AAGCTTTAGT GACATAATGT TTCGGCGTCT GAAGAGGCTT 
    GGTATCTCCA AGACCAAGCC TGAGGAACTC ACACCACAAG AAGTAAAAAA ATTTGCAAGG 
    CTTGATATTG ACCCAGCTTC GATAACATGG AGGAGAGTAA TGGATGTCAA TGACAGGTTT 
    TTGAGAAAGA TTACTGTTGG ACAAGGTCCT GAAGAAAAAG GGATGGTGAG AGAAACAGGA 
    TTTGATATAT CTGTAGCTAG TGAGATAATG GCAGTTTTGG CCCTCACAAC ATCTCTAGCT 
    GATATGAGAG AGAGGCTTGG TAAAATGGTG ATTGGCAATA GCAAGGCCGG GGACCCTGTG 
    ACAGCTGATG ATCTTGGTGT TGGAGGTGCC TTGACTGTAC TGATGAAGGA TGCTATCAAC 
    CCTACTTTAA TGCAGACTCT TGAAGGAACT CCTGTTCTTG TTCATGCTGG TCCTTTTGCG 
    AACATTGCTC ATGGAAATTC TTCCATCGTG GCCGATAAGA TTGCACTGAA GCTGGTGGGA 
    CCGGGTGGGT TTGTGGTCAC AGAAGCAGGT TTTGGTTCTG ATATTGGAAC TGAAAAGTTC 
    ATGAACATAA AGTGCCGATA CAGCGGTTTG ACTCCTCAGT GTGCTGTTAT TGTTGCAACA 
    ATTAGGGCCC TCAAGATGCA TGGTGGTGGG CCAGAAGTGG TTGCTGGGAA GCCTCTTGAC 
    CGTGCCTACA CAACTGAGAA TGTGTCTTTG GTTGAAGCCG GTTGTGTGAA TTTAGCTAGG 
    CATATTTCTA ACACCAAGGC TTATGGTGTA AATGTTGTTG TTGCTGTGAA CATGTTTGCA 
    ACTGATTCAG AAGCAGAACT TAATGCTGTC AGAAATGCAG CTTTGACTGC TGGGGCATAT 
    GATGCTGTTG TCTGTACACA CCATGCTCAT GGTGGGAAAG GAGCAGTGGA ACTTGGAATT 
    GCAGTTCAAA AGGCATGTGG GAATGTGACA CAGCCATTAA AGTTTTTATA TTCCTTGGAC 
    ATTAGTATTA AAGAGAAAAT AGAGGCAATA GCAAGGTCAT ATGGTGCTAG TGGTGTCGAA 
    TACTCAGAGC AGGCTGAGAA ACAAATTGAG ATGTACAGCA GGCAAGGGTT CTCTGGTCTG 
    CCGATCTGCA TGGCTAAAAC CCAGTATTCA TTTTCACACC AAGCGTCTGA GAAAGGAGCC 
    CCCACCGGAT TTGTTTTGCC AATAAGAGAT GTCAGGGCTA GCATCGGTGC TGGTTTCATC 
    TATCCTTTGG TTGGGACTAT GAGTACCATG CCAGGACTTC CAACAAGGCC TTGCTTTTAT 
    GACATTGATC TGGACACTGC CACCGGCAAG GTTATTGGTC TCTCTTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024445572.1
    CDS17..1624
    Translation

    Target ORF information:

    RefSeq Version XM_024589804.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa formate--tetrahydrofolate ligase (LOC7455752), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_024589804.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    ATGTCAGTGG TTGCTACCTG CCTTCGTCAA CCATCACAAG GACCGACTTT TGGAATAAAA 
    GGGGGTGCAG CTGGTGGTGG TTATAGTCAA GTTATTCCAA TGGATGAATT CAATCTTCAC 
    CTAACAGGAG ATATTCATGC AATAACAGCT GCAAATAATC TCCTAGCAGC TGCTATTGAT 
    ACCCGGATTT TCCATGAGTC TACACAATCA GACAAGGCTC TTTTAAACCG CTTATGCCCA 
    CCGAACAAAG AAGGAAAACG AAGCTTTAGT GACATAATGT TTCGGCGTCT GAAGAGGCTT 
    GGTATCTCCA AGACCAAGCC TGAGGAACTC ACACCACAAG AAGTAAAAAA ATTTGCAAGG 
    CTTGATATTG ACCCAGCTTC GATAACATGG AGGAGAGTAA TGGATGTCAA TGACAGGTTT 
    TTGAGAAAGA TTACTGTTGG ACAAGGTCCT GAAGAAAAAG GGATGGTGAG AGAAACAGGA 
    TTTGATATAT CTGTAGCTAG TGAGATAATG GCAGTTTTGG CCCTCACAAC ATCTCTAGCT 
    GATATGAGAG AGAGGCTTGG TAAAATGGTG ATTGGCAATA GCAAGGCCGG GGACCCTGTG 
    ACAGCTGATG ATCTTGGTGT TGGAGGTGCC TTGACTGTAC TGATGAAGGA TGCTATCAAC 
    CCTACTTTAA TGCAGACTCT TGAAGGAACT CCTGTTCTTG TTCATGCTGG TCCTTTTGCG 
    AACATTGCTC ATGGAAATTC TTCCATCGTG GCCGATAAGA TTGCACTGAA GCTGGTGGGA 
    CCGGGTGGGT TTGTGGTCAC AGAAGCAGGT TTTGGTTCTG ATATTGGAAC TGAAAAGTTC 
    ATGAACATAA AGTGCCGATA CAGCGGTTTG ACTCCTCAGT GTGCTGTTAT TGTTGCAACA 
    ATTAGGGCCC TCAAGATGCA TGGTGGTGGG CCAGAAGTGG TTGCTGGGAA GCCTCTTGAC 
    CGTGCCTACA CAACTGAGAA TGTGTCTTTG GTTGAAGCCG GTTGTGTGAA TTTAGCTAGG 
    CATATTTCTA ACACCAAGGC TTATGGTGTA AATGTTGTTG TTGCTGTGAA CATGTTTGCA 
    ACTGATTCAG AAGCAGAACT TAATGCTGTC AGAAATGCAG CTTTGACTGC TGGGGCATAT 
    GATGCTGTTG TCTGTACACA CCATGCTCAT GGTGGGAAAG GAGCAGTGGA ACTTGGAATT 
    GCAGTTCAAA AGGCATGTGG GAATGTGACA CAGCCATTAA AGTTTTTATA TTCCTTGGAC 
    ATTAGTATTA AAGAGAAAAT AGAGGCAATA GCAAGGTCAT ATGGTGCTAG TGGTGTCGAA 
    TACTCAGAGC AGGCTGAGAA ACAAATTGAG ATGTACAGCA GGCAAGGGTT CTCTGGTCTG 
    CCGATCTGCA TGGCTAAAAC CCAGTATTCA TTTTCACACC AAGCGTCTGA GAAAGGAGCC 
    CCCACCGGAT TTGTTTTGCC AATAAGAGAT GTCAGGGCTA GCATCGGTGC TGGTTTCATC 
    TATCCTTTGG TTGGGACTAT GAGTACCATG CCAGGACTTC CAACAAGGCC TTGCTTTTAT 
    GACATTGATC TGGACACTGC CACCGGCAAG GTTATTGGTC TCTCTTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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