ORF » Species Summary » Populus trichocarpa » POPTR_0009s05220g cDNA ORF clone

POPTR_0009s05220g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

The following POPTR_0009s05220g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0009s05220g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa22048 XM_006378990.1
Latest version!		 Populus trichocarpa hypothetical protein (POPTR_0009s05220g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 9-11 $223.30
$319.00
OPa436486 XM_006378990.2
Latest version!		 Populus trichocarpa exosome complex component RRP45A (LOC18102022), mRNA. pcDNA3.1-C-(k)DYK or customized vector 9-11 $223.30
$319.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    POPTR_0009s05220g ( XM_006378990.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_006379052.1 Populus trichocarpa hypothetical protein (POPTR_0009s05220g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa22048
    Clone ID Related Accession (Same CDS sequence) XM_006378990.1
    Accession Version XM_006378990.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1395bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008475). 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGATGGAA GATTAGCGAA TACATGGAGA TTAACATTGA ACGAGAAGAA ATTCATAGAG 
    ACTGCCTTGG CTTCAAACCT TAGAATTGAT GGTCGTAATC CTCTTGAGTA TCGCAAAATT 
    ACCATCAAGT TTGGAAGAGA AGATGGATCA TCAGAGGTGC AGCTAGGACA GACTCATGTA 
    ATGGGTTTTG TGACAGGTCA ATTAGTTCAG CCTTATCAAG ACCGACAGAA TGAAGGGACA 
    CTTTCTATTT TTACCGAGTT CTCTCCGATG GCTGATCCTT CATTCGAACC AGGCCGCCCT 
    GGGGAATCTG CAGTGGAGTT GGGCCGTATA GTTGATCGTG GTCTAAGGGA GAGCAGGGCT 
    GTGGATACAG AATCGCTTTG TGTTCTTGCC GGGAAGTTAG TGTGGGCCAT TCGTATTGAC 
    CTTCATATCT TAGACAATGG GGGAAATCTT GTTGATGCTG CCAATATTGC TGCCTTAGCC 
    TCTCTCTTAA CGTTTAGAAG ACCAGAATGC ACTTTAGGAG GTGAAGATGG TCAAGAAGTG 
    ATAGTACATC CACCAGAGGA AAGAGAGCCG CTTCCTTTGA TAGTCCACCA TCTCCCTATA 
    GCAATAACTT TTGCATTTTT CGGTGGTGAG GGCAAAATGG TTGTTGATCC TACCCAAAGT 
    GAGGAGGCTG TTATGGGTGG AAGAATGACT GTAACGGTTA ATGCGAATGG TGACATTTGT 
    GCAATTCAGA AACCTGGAGG GGAGGGTGTG CCACAGAGTG CTATTATGCA TTGTTTGCAA 
    CTTGCTTCTT TGAGTGCTGA ATCCATAACA AAGAAGATAA AAAATGCAGT TGAAGCATAC 
    AACACAGAGA GAGCATTACG CAAGATCAAG CGCCACCCTA CTTCTGGTGC TGGCAATGTT 
    AGTGTAGCTG CTCTTGATGT AACAGAGCAA AATAAAACCA TTGAGCAGGT GGAAGGTAGT 
    GAGTTGTCAA GGCATCATAT GGAGAGATTA AAGTTGGTAC CTGATGAAAC CTGCAGTGGT 
    AGAGGTAATG ACAATGATGG TGATATCAAA CCATCTAAAC TAGGTGGAAC AGGTCGAGGA 
    CAGGGCAATG CTATGAATTT TCTTGGGGGT CCATCAAGCT GGGATCCTTA TTTGAAGGTC 
    GTTGATCCTG ATTCCCTGAA AGCCTCTCTA GCCTCACGTG GAGTATCAAC ACGGCACGTG 
    AAACAAAAAG GAAGCGAGGA AAATAGTCCC AAAACTGATC CAGAGAAACC AACCGAAGAT 
    ATTAAACAAG CAACTTTAGC TACAGATACA TCTGGAACTG CACTGCAAAC AAATGGAGAG 
    AAAACATTGA AGGATGCTGT GAAGCCCAAG AACAAGAGGA GAAAGAGAGC TTCTCCCAGC 
    ATGAAAGGAA GTTAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006379052.1
    CDS328..1722
    Translation

    Target ORF information:

    RefSeq Version XM_006378990.1
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0009s05220g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006378990.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGGATGGAA GATTAGCGAA TACATGGAGA TTAACATTGA ACGAGAAGAA ATTCATAGAG 
    ACTGCCTTGG CTTCAAACCT TAGAATTGAT GGTCGTAATC CTCTTGAGTA TCGCAAAATT 
    ACCATCAAGT TTGGAAGAGA AGATGGATCA TCAGAGGTGC AGCTAGGACA GACTCATGTA 
    ATGGGTTTTG TGACAGGTCA ATTAGTTCAG CCTTATCAAG ACCGACAGAA TGAAGGGACA 
    CTTTCTATTT TTACCGAGTT CTCTCCGATG GCTGATCCTT CATTCGAACC AGGCCGCCCT 
    GGGGAATCTG CAGTGGAGTT GGGCCGTATA GTTGATCGTG GTCTAAGGGA GAGCAGGGCT 
    GTGGATACAG AATCGCTTTG TGTTCTTGCC GGGAAGTTAG TGTGGGCCAT TCGTATTGAC 
    CTTCATATCT TAGACAATGG GGGAAATCTT GTTGATGCTG CCAATATTGC TGCCTTAGCC 
    TCTCTCTTAA CGTTTAGAAG ACCAGAATGC ACTTTAGGAG GTGAAGATGG TCAAGAAGTG 
    ATAGTACATC CACCAGAGGA AAGAGAGCCG CTTCCTTTGA TAGTCCACCA TCTCCCTATA 
    GCAATAACTT TTGCATTTTT CGGTGGTGAG GGCAAAATGG TTGTTGATCC TACCCAAAGT 
    GAGGAGGCTG TTATGGGTGG AAGAATGACT GTAACGGTTA ATGCGAATGG TGACATTTGT 
    GCAATTCAGA AACCTGGAGG GGAGGGTGTG CCACAGAGTG CTATTATGCA TTGTTTGCAA 
    CTTGCTTCTT TGAGTGCTGA ATCCATAACA AAGAAGATAA AAAATGCAGT TGAAGCATAC 
    AACACAGAGA GAGCATTACG CAAGATCAAG CGCCACCCTA CTTCTGGTGC TGGCAATGTT 
    AGTGTAGCTG CTCTTGATGT AACAGAGCAA AATAAAACCA TTGAGCAGGT GGAAGGTAGT 
    GAGTTGTCAA GGCATCATAT GGAGAGATTA AAGTTGGTAC CTGATGAAAC CTGCAGTGGT 
    AGAGGTAATG ACAATGATGG TGATATCAAA CCATCTAAAC TAGGTGGAAC AGGTCGAGGA 
    CAGGGCAATG CTATGAATTT TCTTGGGGGT CCATCAAGCT GGGATCCTTA TTTGAAGGTC 
    GTTGATCCTG ATTCCCTGAA AGCCTCTCTA GCCTCACGTG GAGTATCAAC ACGGCACGTG 
    AAACAAAAAG GAAGCGAGGA AAATAGTCCC AAAACTGATC CAGAGAAACC AACCGAAGAT 
    ATTAAACAAG CAACTTTAGC TACAGATACA TCTGGAACTG CACTGCAAAC AAATGGAGAG 
    AAAACATTGA AGGATGCTGT GAAGCCCAAG AACAAGAGGA GAAAGAGAGC TTCTCCCAGC 
    ATGAAAGGAA GTTAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0009s05220g ( XM_006378990.2 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_006379052.2 Populus trichocarpa exosome complex component RRP45A (LOC18102022), mRNA.
    Price & Availability↑
    CloneID OPa436486
    Clone ID Related Accession (Same CDS sequence) XM_006378990.2
    Accession Version XM_006378990.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1293bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product exosome complex component RRP45A
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037293.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_006378990.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGGATGGAA GATTAGCGAA TACATGGAGA TTAACATTGA ACGAGAAGAA ATTCATAGAG 
    ACTGCCTTGG CTTCAAACCT TAGAATTGAT GGTCGTAATC CTCTTGAGTA TCGCAAAATT 
    ACCATCAAGT TTGGAAGAGA AGATGGATCA TCAGAGGTGC AGCTAGGACA GACTCATGTA 
    ATGGGTTTTG TGACAGGTCA ATTAGTTCAG CCTTATCAAG ACCGACAGAA TGAAGGGACA 
    CTTTCTATTT TTACCGAGTT CTCTCCGATG GCTGATCCTT CATTCGAACC AGGCCGCCCT 
    GGGGAATCTG CAGTGGAGTT GGGCCGTATA GTTGATCGTG GTCTAAGGGA GAGCAGGGCT 
    GTGGATACAG AATCGCTTTG TGTTCTTGCC GGGAAGTTAG TGTGGGCCAT TCGTATTGAC 
    CTTCATATCT TAGACAATGG GGGAAATCTT GTTGAGGAAA GAGAGCCGCT TCCTTTGATA 
    GTCCACCATC TCCCTATAGC AATAACTTTT GCATTTTTCG GTGGTGAGGG CAAAATGGTT 
    GTTGATCCTA CCCAAAGTGA GGAGGCTGTT ATGGGTGGAA GAATGACTGT AACGGTTAAT 
    GCGAATGGTG ACATTTGTGC AATTCAGAAA CCTGGAGGGG AGGGTGTGCC ACAGAGTGCT 
    ATTATGCATT GTTTGCAACT TGCTTCTTTG AGTGCTGAAT CCATAACAAA GAAGATAAAA 
    AATGCAGTTG AAGCATACAA CACAGAGAGA GCATTACGCA AGATCAAGCG CCACCCTACT 
    TCTGGTGCTG GCAATGTTAG TGTAGCTGCT CTTGATGTAA CAGAGCAAAA TAAAACCATT 
    GAGCAGGTGG AAGGTAGTGA GTTGTCAAGG CATCATATGG AGAGATTAAA GTTGGTACCT 
    GATGAAACCT GCAGTGGTAG AGGTAATGAC AATGATGGTG ATATCAAACC ATCTAAACTA 
    GGTGGAACAG GTCGAGGACA GGGCAATGCT ATGAATTTTC TTGGGGGTCC ATCAAGCTGG 
    GATCCTTATT TGAAGGTCGT TGATCCTGAT TCCCTGAAAG CCTCTCTAGC CTCACGTGGA 
    GTATCAACAC GGCACGTGAA ACAAAAAGGA AGCGAGGAAA ATAGTCCCAA AACTGATCCA 
    GAGAAACCAA CCGAAGATAT TAAACAAGCA ACTTTAGCTA CAGATACATC TGGAACTGCA 
    CTGCAAACAA ATGGAGAGAA AACATTGAAG GATGCTGTGA AGCCCAAGAA CAAGAGGAGA 
    AAGAGAGCTT CTCCCAGCAT GAAAGGAAGT TAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006379052.2
    CDS345..1637
    Translation

    Target ORF information:

    RefSeq Version XM_006378990.2
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa exosome complex component RRP45A (LOC18102022), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006378990.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGGATGGAA GATTAGCGAA TACATGGAGA TTAACATTGA ACGAGAAGAA ATTCATAGAG 
    ACTGCCTTGG CTTCAAACCT TAGAATTGAT GGTCGTAATC CTCTTGAGTA TCGCAAAATT 
    ACCATCAAGT TTGGAAGAGA AGATGGATCA TCAGAGGTGC AGCTAGGACA GACTCATGTA 
    ATGGGTTTTG TGACAGGTCA ATTAGTTCAG CCTTATCAAG ACCGACAGAA TGAAGGGACA 
    CTTTCTATTT TTACCGAGTT CTCTCCGATG GCTGATCCTT CATTCGAACC AGGCCGCCCT 
    GGGGAATCTG CAGTGGAGTT GGGCCGTATA GTTGATCGTG GTCTAAGGGA GAGCAGGGCT 
    GTGGATACAG AATCGCTTTG TGTTCTTGCC GGGAAGTTAG TGTGGGCCAT TCGTATTGAC 
    CTTCATATCT TAGACAATGG GGGAAATCTT GTTGAGGAAA GAGAGCCGCT TCCTTTGATA 
    GTCCACCATC TCCCTATAGC AATAACTTTT GCATTTTTCG GTGGTGAGGG CAAAATGGTT 
    GTTGATCCTA CCCAAAGTGA GGAGGCTGTT ATGGGTGGAA GAATGACTGT AACGGTTAAT 
    GCGAATGGTG ACATTTGTGC AATTCAGAAA CCTGGAGGGG AGGGTGTGCC ACAGAGTGCT 
    ATTATGCATT GTTTGCAACT TGCTTCTTTG AGTGCTGAAT CCATAACAAA GAAGATAAAA 
    AATGCAGTTG AAGCATACAA CACAGAGAGA GCATTACGCA AGATCAAGCG CCACCCTACT 
    TCTGGTGCTG GCAATGTTAG TGTAGCTGCT CTTGATGTAA CAGAGCAAAA TAAAACCATT 
    GAGCAGGTGG AAGGTAGTGA GTTGTCAAGG CATCATATGG AGAGATTAAA GTTGGTACCT 
    GATGAAACCT GCAGTGGTAG AGGTAATGAC AATGATGGTG ATATCAAACC ATCTAAACTA 
    GGTGGAACAG GTCGAGGACA GGGCAATGCT ATGAATTTTC TTGGGGGTCC ATCAAGCTGG 
    GATCCTTATT TGAAGGTCGT TGATCCTGAT TCCCTGAAAG CCTCTCTAGC CTCACGTGGA 
    GTATCAACAC GGCACGTGAA ACAAAAAGGA AGCGAGGAAA ATAGTCCCAA AACTGATCCA 
    GAGAAACCAA CCGAAGATAT TAAACAAGCA ACTTTAGCTA CAGATACATC TGGAACTGCA 
    CTGCAAACAA ATGGAGAGAA AACATTGAAG GATGCTGTGA AGCCCAAGAA CAAGAGGAGA 
    AAGAGAGCTT CTCCCAGCAT GAAAGGAAGT TAG

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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