Atp6v0d1 cDNA ORF clone, Mus musculus(house mouse)

Gene
Clones
gRNAs

Summary

Gene Symbol	Atp6v0d1
Entrez Gene ID	11972
Full Name	ATPase, H+ transporting, lysosomal V0 subunit D1
Synonyms	AI267038,Ac39,Atp6d,P39,VATX,Vma6
General protein information	Preferred Names ATPase, H+ transporting, lysosomal V0 subunit D1 Names V-type proton ATPase subunit d 1 ATPase, H+ transporting, V0 subunit D ATPase, H+ transporting, lysosomal (vacuolar proton pump), 42 kDa ATPase, H+ transporting, lysosomal 38kDa, V0 subunit D V-ATPase 40 kDa accessory protein V-ATPase AC39 subunit V-ATPase subunit d 1 lysosomal 38kDa physophilin vacuolar proton pump subunit d 1
Gene Type	protein-coding
Organism	Mus musculus(house mouse)
Genome	Chromosome: 8 Map Location: 8\|8 D3

mRNA and Protein(s)

mRNA	Protein	Name
NM_013477.4	NP_038505.2	V-type proton ATPase subunit d 1
NM_013477.3	NP_038505.2	V-type proton ATPase subunit d 1

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Atp6v0d1	NP_038505.2
Saccharomyces cerevisiae (baker's yeast)	VMA6	NP_013552.3
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP000721	XP_311260.4
Xenopus tropicalis (tropical clawed frog)	atp6v0d1	NP_001017310.1
Homo sapiens (human)	ATP6V0D1	NP_004682.2
Arabidopsis thaliana (thale cress)	AT3G28710	NP_189512.1
Arabidopsis thaliana (thale cress)	AT3G28715	NP_189513.1
Kluyveromyces lactis	KLLA0B04752g	XP_451745.1
Magnaporthe oryzae (rice blast fungus)	MGG_07007	XP_003709765.1
Eremothecium gossypii	AGOS_AER146C	NP_985005.2
Pan troglodytes (chimpanzee)	ATP6V0D1	XP_001163837.1
Canis lupus familiaris (dog)	ATP6V0D1	XP_536816.2
Bos taurus (cattle)	ATP6V0D1	NP_776930.1
Gallus gallus (chicken)	ATP6V0D1	XP_414041.1
Caenorhabditis elegans (roundworm)	vha-16	NP_491515.2
Neurospora crassa	NCU03395	XP_956842.1
Schizosaccharomyces pombe (fission yeast)	vma6	NP_594237.1
Rattus norvegicus (Norway rat)	Atp6v0d1	NP_001011927.1
Danio rerio (zebrafish)	atp6v0d1	NP_955914.1
Drosophila melanogaster (fruit fly)	VhaAC39-1	NP_570080.1
Oryza sativa (rice)	Os01g0587000	NP_001043429.1

Gene Ontology
Bibliography

Related articles in PubMed

TMEM55B contributes to lysosomal homeostasis and amino acid-induced mTORC1 activation.
Hashimoto Y, Shirane M, Nakayama KI
Genes to cells : devoted to molecular & cellular mechanisms23(6)418-434(2018 Jun)

Defective Mitochondrial tRNA Taurine Modification Activates Global Proteostress and Leads to Mitochondrial Disease.
Fakruddin M, Wei FY, Suzuki T, Asano K, Kaieda T, Omori A, Izumi R, Fujimura A, Kaitsuka T, Miyata K, Araki K, Oike Y, Scorrano L, Suzuki T, Tomizawa K
Cell reports22(2)482-496(2018 01)

Urogenital and caudal dysgenesis in adrenocortical dysplasia (acd) mice is caused by a splicing mutation in a novel telomeric regulator.
Keegan CE, Hutz JE, Else T, Adamska M, Shah SP, Kent AE, Howes JM, Beamer WG, Hammer GD
Human molecular genetics14(1)113-23(2005 Jan)

Transcriptional regulation of agouti-related protein (Agrp) in transgenic mice.
Kaelin CB, Xu AW, Lu XY, Barsh GS
Endocrinology145(12)5798-806(2004 Dec)

Expression and function of the mouse V-ATPase d subunit isoforms.
Nishi T, Kawasaki-Nishi S, Forgac M
The Journal of biological chemistry278(47)46396-402(2003 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Atp6v0d1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Atp6v0d1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OMu09449	NM_013477.4 Latest version!	Mus musculus ATPase, H+ transporting, lysosomal V0 subunit D1 (Atp6v0d1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
View Old Accession Versions >>
OMu09449	NM_013477.3	Mus musculus ATPase, H+ transporting, lysosomal V0 subunit D1 (Atp6v0d1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$223.30 $319.00
Hide Old Accession Versions >>

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Atp6v0d1 ( NM_013477.4 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_038505.2 Mus musculus ATPase, H+ transporting, lysosomal V0 subunit D1 (Atp6v0d1), mRNA.

Price & Availability↑

CloneID	OMu09449
Clone ID Related Accession (Same CDS sequence)	NM_013477.4 , NM_013477.3
Accession Version	NM_013477.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1056bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1573833600000
Organism	Mus musculus(house mouse)
Product	V-type proton ATPase subunit d 1
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC151573.2, AK083372.1 and CD776853.1. On Mar 28, 2018 this sequence version replaced NM_013477.3. ##Evidence-Data-START## Transcript exon combination :: AK133921.1, AK083372.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164139 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGTCGTTCT TCCCGGAGCT CTATTTCAAC GTGGACAATG GCTACTTGGA GGGATTAGTG 
CGCGGCCTGA AGGCCGGGGT GCTCAGCCAG GCGGACTACC TCAACCTGGT GCAGTGCGAG 
ACGCTCGAGG ACTTGAAGCT GCACCTACAG AGTACAGATT ATGGCAACTT CCTGGCCAAT 
GAAGCGTCAC CTCTGACGGT GTCAGTCATC GATGACAAGC TCAAGGAGAA GATGGTAGTA 
GAGTTCCGCC ACATGAGAAA CCATGCTTAT GAGCCGCTCG CCAGCTTCCT GGACTTCATA 
ACTTATAGCT ACATGATTGA CAACGTGATC CTGCTAATCA CAGGCACACT GCACCAGCGT 
TCAATAGCTG AACTTGTGCC CAAGTGCCAT CCGCTAGGCA GCTTTGAGCA GATGGAGGCT 
GTGAACATCG CACAGACACC TGCAGAGCTC TACAATGCCA TTCTGGTGGA CACACCCCTG 
GCGGCTTTTT TCCAGGACTG CATCTCAGAG CAGGACCTTG ATGAGATGAA CATCGAGATA 
ATCCGAAATA CGCTTTACAA GGCCTACTTG GAGTCCTTCT ACAAGTTCTG TACTCTGTTG 
GGTGGGACCA CAGCTGATGC CATGTGTCCT ATCCTAGAGT TTGAAGCAGA CCGCCGCGCT 
TTCATCATCA CCATCAACTC TTTCGGCACA GAGCTGTCCA AGGAGGACCG TGCCAAGCTC 
TTCCCGCACT GTGGCCGGCT CTACCCTGAG GGCTTGGCTC AGCTGGCGCG GGCTGATGAC 
TATGAACAGG TCAAGAATGT AGCTGATTAC TACCCGGAAT ACAAACTGCT TTTTGAGGGT 
GCAGGTAGCA ATCCTGGAGA CAAGACCCTG GAGGACCGGT TTTTTGAACA TGAGGTGAAG 
CTAAACAAGC TGGCCTTCCT GAACCAGTTC CATTTTGGTG TCTTTTATGC CTTTGTGAAG 
CTTAAGGAAC AGGAATGTCG CAACATCGTA TGGATTGCTG AGTGCATTGC CCAGCGCCAT 
CGCGCCAAGA TCGACAACTA CATCCCCATC TTTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_038505.2
CDS	153..1208
Translation	MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDKLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF

Target ORF information:

RefSeq Version	NM_013477.4
Organism	Mus musculus(house mouse)
Definition	Mus musculus ATPase, H+ transporting, lysosomal V0 subunit D1 (Atp6v0d1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_013477.4

ORF Insert Sequence:

ATGTCGTTCT TCCCGGAGCT CTATTTCAAC GTGGACAATG GCTACTTGGA GGGATTAGTG 
CGCGGCCTGA AGGCCGGGGT GCTCAGCCAG GCGGACTACC TCAACCTGGT GCAGTGCGAG 
ACGCTCGAGG ACTTGAAGCT GCACCTACAG AGTACAGATT ATGGCAACTT CCTGGCCAAT 
GAAGCGTCAC CTCTGACGGT GTCAGTCATC GATGACAAGC TCAAGGAGAA GATGGTAGTA 
GAGTTCCGCC ACATGAGAAA CCATGCTTAT GAGCCGCTCG CCAGCTTCCT GGACTTCATA 
ACTTATAGCT ACATGATTGA CAACGTGATC CTGCTAATCA CAGGCACACT GCACCAGCGT 
TCAATAGCTG AACTTGTGCC CAAGTGCCAT CCGCTAGGCA GCTTTGAGCA GATGGAGGCT 
GTGAACATCG CACAGACACC TGCAGAGCTC TACAATGCCA TTCTGGTGGA CACACCCCTG 
GCGGCTTTTT TCCAGGACTG CATCTCAGAG CAGGACCTTG ATGAGATGAA CATCGAGATA 
ATCCGAAATA CGCTTTACAA GGCCTACTTG GAGTCCTTCT ACAAGTTCTG TACTCTGTTG 
GGTGGGACCA CAGCTGATGC CATGTGTCCT ATCCTAGAGT TTGAAGCAGA CCGCCGCGCT 
TTCATCATCA CCATCAACTC TTTCGGCACA GAGCTGTCCA AGGAGGACCG TGCCAAGCTC 
TTCCCGCACT GTGGCCGGCT CTACCCTGAG GGCTTGGCTC AGCTGGCGCG GGCTGATGAC 
TATGAACAGG TCAAGAATGT AGCTGATTAC TACCCGGAAT ACAAACTGCT TTTTGAGGGT 
GCAGGTAGCA ATCCTGGAGA CAAGACCCTG GAGGACCGGT TTTTTGAACA TGAGGTGAAG 
CTAAACAAGC TGGCCTTCCT GAACCAGTTC CATTTTGGTG TCTTTTATGC CTTTGTGAAG 
CTTAAGGAAC AGGAATGTCG CAACATCGTA TGGATTGCTG AGTGCATTGC CCAGCGCCAT 
CGCGCCAAGA TCGACAACTA CATCCCCATC TTTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Atp6v0d1 ( NM_013477.3 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_038505.2 Mus musculus ATPase, H+ transporting, lysosomal V0 subunit D1 (Atp6v0d1), mRNA.

Price & Availability↑

CloneID	OMu09449
Clone ID Related Accession (Same CDS sequence)	NM_013477.4 , NM_013477.3
Accession Version	NM_013477.3	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1056bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1506700800000
Organism	Mus musculus(house mouse)
Product	V-type proton ATPase subunit d 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AK083372.1. On Apr 5, 2007 this sequence version replaced NM_013477.2. ##Evidence-Data-START## Transcript exon combination :: AK083372.1, AK133921.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164139 [ECO:0000348] ##Evidence-Data-END##

ATGTCGTTCT TCCCGGAGCT CTATTTCAAC GTGGACAATG GCTACTTGGA GGGATTAGTG 
CGCGGCCTGA AGGCCGGGGT GCTCAGCCAG GCGGACTACC TCAACCTGGT GCAGTGCGAG 
ACGCTCGAGG ACTTGAAGCT GCACCTACAG AGTACAGATT ATGGCAACTT CCTGGCCAAT 
GAAGCGTCAC CTCTGACGGT GTCAGTCATC GATGACAAGC TCAAGGAGAA GATGGTAGTA 
GAGTTCCGCC ACATGAGAAA CCATGCTTAT GAGCCGCTCG CCAGCTTCCT GGACTTCATA 
ACTTATAGCT ACATGATTGA CAACGTGATC CTGCTAATCA CAGGCACACT GCACCAGCGT 
TCAATAGCTG AACTTGTGCC CAAGTGCCAT CCGCTAGGCA GCTTTGAGCA GATGGAGGCT 
GTGAACATCG CACAGACACC TGCAGAGCTC TACAATGCCA TTCTGGTGGA CACACCCCTG 
GCGGCTTTTT TCCAGGACTG CATCTCAGAG CAGGACCTTG ATGAGATGAA CATCGAGATA 
ATCCGAAATA CGCTTTACAA GGCCTACTTG GAGTCCTTCT ACAAGTTCTG TACTCTGTTG 
GGTGGGACCA CAGCTGATGC CATGTGTCCT ATCCTAGAGT TTGAAGCAGA CCGCCGCGCT 
TTCATCATCA CCATCAACTC TTTCGGCACA GAGCTGTCCA AGGAGGACCG TGCCAAGCTC 
TTCCCGCACT GTGGCCGGCT CTACCCTGAG GGCTTGGCTC AGCTGGCGCG GGCTGATGAC 
TATGAACAGG TCAAGAATGT AGCTGATTAC TACCCGGAAT ACAAACTGCT TTTTGAGGGT 
GCAGGTAGCA ATCCTGGAGA CAAGACCCTG GAGGACCGGT TTTTTGAACA TGAGGTGAAG 
CTAAACAAGC TGGCCTTCCT GAACCAGTTC CATTTTGGTG TCTTTTATGC CTTTGTGAAG 
CTTAAGGAAC AGGAATGTCG CAACATCGTA TGGATTGCTG AGTGCATTGC CCAGCGCCAT 
CGCGCCAAGA TCGACAACTA CATCCCCATC TTTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_038505.2
CDS	129..1184
Translation	MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDKLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF

Target ORF information:

RefSeq Version	NM_013477.3
Organism	Mus musculus(house mouse)
Definition	Mus musculus ATPase, H+ transporting, lysosomal V0 subunit D1 (Atp6v0d1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_013477.3

ORF Insert Sequence:

ATGTCGTTCT TCCCGGAGCT CTATTTCAAC GTGGACAATG GCTACTTGGA GGGATTAGTG 
CGCGGCCTGA AGGCCGGGGT GCTCAGCCAG GCGGACTACC TCAACCTGGT GCAGTGCGAG 
ACGCTCGAGG ACTTGAAGCT GCACCTACAG AGTACAGATT ATGGCAACTT CCTGGCCAAT 
GAAGCGTCAC CTCTGACGGT GTCAGTCATC GATGACAAGC TCAAGGAGAA GATGGTAGTA 
GAGTTCCGCC ACATGAGAAA CCATGCTTAT GAGCCGCTCG CCAGCTTCCT GGACTTCATA 
ACTTATAGCT ACATGATTGA CAACGTGATC CTGCTAATCA CAGGCACACT GCACCAGCGT 
TCAATAGCTG AACTTGTGCC CAAGTGCCAT CCGCTAGGCA GCTTTGAGCA GATGGAGGCT 
GTGAACATCG CACAGACACC TGCAGAGCTC TACAATGCCA TTCTGGTGGA CACACCCCTG 
GCGGCTTTTT TCCAGGACTG CATCTCAGAG CAGGACCTTG ATGAGATGAA CATCGAGATA 
ATCCGAAATA CGCTTTACAA GGCCTACTTG GAGTCCTTCT ACAAGTTCTG TACTCTGTTG 
GGTGGGACCA CAGCTGATGC CATGTGTCCT ATCCTAGAGT TTGAAGCAGA CCGCCGCGCT 
TTCATCATCA CCATCAACTC TTTCGGCACA GAGCTGTCCA AGGAGGACCG TGCCAAGCTC 
TTCCCGCACT GTGGCCGGCT CTACCCTGAG GGCTTGGCTC AGCTGGCGCG GGCTGATGAC 
TATGAACAGG TCAAGAATGT AGCTGATTAC TACCCGGAAT ACAAACTGCT TTTTGAGGGT 
GCAGGTAGCA ATCCTGGAGA CAAGACCCTG GAGGACCGGT TTTTTGAACA TGAGGTGAAG 
CTAAACAAGC TGGCCTTCCT GAACCAGTTC CATTTTGGTG TCTTTTATGC CTTTGTGAAG 
CTTAAGGAAC AGGAATGTCG CAACATCGTA TGGATTGCTG AGTGCATTGC CCAGCGCCAT 
CGCGCCAAGA TCGACAACTA CATCCCCATC TTTTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

TMEM55B contributes to lysosomal homeostasis and amino acid-induced mTORC1 activation.
Genes to cells : devoted to molecular & cellular mechanisms23(6)418-434(2018 Jun)
Hashimoto Y,Shirane M,Nakayama KI

Defective Mitochondrial tRNA Taurine Modification Activates Global Proteostress and Leads to Mitochondrial Disease.
Cell reports22(2)482-496(2018 01)
Fakruddin M,Wei FY,Suzuki T,Asano K,Kaieda T,Omori A,Izumi R,Fujimura A,Kaitsuka T,Miyata K,Araki K,Oike Y,Scorrano L,Suzuki T,Tomizawa K

Urogenital and caudal dysgenesis in adrenocortical dysplasia (acd) mice is caused by a splicing mutation in a novel telomeric regulator.
Human molecular genetics14(1)113-23(2005 Jan)
Keegan CE,Hutz JE,Else T,Adamska M,Shah SP,Kent AE,Howes JM,Beamer WG,Hammer GD

Transcriptional regulation of agouti-related protein (Agrp) in transgenic mice.
Endocrinology145(12)5798-806(2004 Dec)
Kaelin CB,Xu AW,Lu XY,Barsh GS

Expression and function of the mouse V-ATPase d subunit isoforms.
The Journal of biological chemistry278(47)46396-402(2003 Nov)
Nishi T,Kawasaki-Nishi S,Forgac M

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Atp6v0d1 cDNA ORF clone, Mus musculus(house mouse)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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