Gene Symbol | LOC100280136 |
Entrez Gene ID | 100280136 |
Full Name | Auxin response factor 16 |
Synonyms | ARF19,GRMZM2G013663 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC100280136 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
XM_023302480.1 | XP_023158248.1 | auxin response factor 16 isoform X1 |
XM_008645286.2 | XP_008643508.1 | auxin response factor 16 isoform X1 |
XM_008645286.3 | XP_008643508.1 | auxin response factor 16 isoform X1 |
NM_001361024.1 | NP_001347953.1 | Auxin response factor 16 |
NM_001153069.2 | NP_001146541.1 | Auxin response factor 16 |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
Insights into corn genes derived from large-scale cDNA sequencing.
Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA
Plant molecular biology69(1-2)179-94(2009 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100280136 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100280136 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa14849 | |
Clone ID Related Accession (Same CDS sequence) | NM_001153069.2 | |
Accession Version | NM_001153069.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 522bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1495555200000 | |
Organism | Zea mays | |
Product | Auxin response factor 16 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT055641.1. On Aug 4, 2015 this sequence version replaced NM_001153069.1. ##Evidence-Data-START## Transcript exon combination :: BT055641.1, EE031381.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780084, SAMN00780085 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCTCTTCG GGAAAGCGAT CCTCACCGAG CAGCAGATAT CGCTAGGCGG CGGCAATGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001146541.1 |
CDS | 168..689 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCTCTTCG GGAAAGCGAT CCTCACCGAG CAGCAGATAT CGCTAGGCGG CGGCAATGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27799 | |
Clone ID Related Accession (Same CDS sequence) | XM_023302480.1 , XM_008645286.2 , XM_008645286.3 , NM_001361024.1 | |
Accession Version | NM_001361024.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2178bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1525363200000 | |
Organism | Zea mays | |
Product | Auxin response factor 16 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EE034731.2, CO524829.1, LPUQ01002053.1, EC873536.2 and BT055641.1. On Feb 24, 2018 this sequence version replaced XM_008645286.3. ##Evidence-Data-START## Transcript exon combination :: SRR3147030.2777.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780084, SAMN00780135 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGATTACTT TCGTGGACTC GGCGGCCATG GAGCGGGAGC GGGAGAGTGA CAGGTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001347953.1 |
CDS | 507..2684 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATTACTT TCGTGGACTC GGCGGCCATG GAGCGGGAGC GGGAGAGTGA CAGGTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27799 | |
Clone ID Related Accession (Same CDS sequence) | XM_023302480.1 , XM_008645286.2 , XM_008645286.3 , NM_001361024.1 | |
Accession Version | XM_023302480.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2178bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | auxin response factor 16 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024463.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATTACTT TCGTGGACTC GGCGGCCATG GAGCGGGAGC GGGAGAGTGA CAGGTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_023158248.1 |
CDS | 1029..3206 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATTACTT TCGTGGACTC GGCGGCCATG GAGCGGGAGC GGGAGAGTGA CAGGTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27799 | |
Clone ID Related Accession (Same CDS sequence) | XM_023302480.1 , XM_008645286.2 , XM_008645286.3 , NM_001361024.1 | |
Accession Version | XM_008645286.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2178bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | auxin response factor 16 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024463.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008645286.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATTACTT TCGTGGACTC GGCGGCCATG GAGCGGGAGC GGGAGAGTGA CAGGTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008643508.1 |
CDS | 878..3055 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATTACTT TCGTGGACTC GGCGGCCATG GAGCGGGAGC GGGAGAGTGA CAGGTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27799 | |
Clone ID Related Accession (Same CDS sequence) | XM_023302480.1 , XM_008645286.2 , XM_008645286.3 , NM_001361024.1 | |
Accession Version | XM_008645286.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2178bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | auxin response factor 16 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024463.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008645286.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATTACTT TCGTGGACTC GGCGGCCATG GAGCGGGAGC GGGAGAGTGA CAGGTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008643508.1 |
CDS | 864..3041 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATTACTT TCGTGGACTC GGCGGCCATG GAGCGGGAGC GGGAGAGTGA CAGGTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |
Insights into corn genes derived from large-scale cDNA sequencing. |