Gene Symbol | LOC100278107 |
Entrez Gene ID | 100278107 |
Full Name | uncharacterized LOC100278107 |
Synonyms | GRMZM2G135320,GRMZM2G135366 |
Gene Type | protein-coding |
Organism | Zea mays |
ORF » Species Summary » Zea mays » LOC100278107 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
XM_023300757.1 | XP_023156525.1 | uncharacterized protein LOC100278107 isoform X2 |
XM_023300758.1 | XP_023156526.1 | uncharacterized protein LOC100278107 isoform X3 |
NM_001361304.1 | NP_001348233.1 | uncharacterized protein LOC100278107 isoform 1 |
NM_001361305.1 | NP_001348234.1 | uncharacterized protein LOC100278107 isoform 2 |
XM_020542023.1 | XP_020397612.1 | uncharacterized protein LOC100278107 isoform X1 |
NM_001361306.1 | NP_001348235.1 | uncharacterized protein LOC100278107 isoform 3 |
XM_023300756.1 | XP_023156524.1 | uncharacterized protein LOC100278107 isoform X1 |
NM_001151491.1 | NP_001144963.1 | uncharacterized protein LOC100278107 |
Insights into corn genes derived from large-scale cDNA sequencing.
Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA
Plant molecular biology69(1-2)179-94(2009 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100278107 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100278107 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa07987 | |
Clone ID Related Accession (Same CDS sequence) | NM_001151491.1 | |
Accession Version | NM_001151491.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 354bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1492704000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100278107 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU971976.1. ##Evidence-Data-START## Transcript is intronless :: EU971976.1 [ECO:0000345] ##Evidence-Data-END## |
1 | ATGGAGAAGA TCGTGCCCGG AGCGCCCGCC ATGAAGACCA AGTCCAGCAA GAAGGACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001144963.1 |
CDS | 158..511 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGAGAAGA TCGTGCCCGG AGCGCCCGCC ATGAAGACCA AGTCCAGCAA GAAGGACCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa69001 | |
Clone ID Related Accession (Same CDS sequence) | XM_023300758.1 , NM_001361304.1 | |
Accession Version | NM_001361304.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 906bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1536595200000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100278107 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DT650108.1, DT650107.1 and LPUQ01001522.1. On Mar 19, 2018 this sequence version replaced XM_023300758.1. Transcript Variant: This variant (1) has the shortest intron due to splice acceptor choice. ##Evidence-Data-START## Transcript exon combination :: SRR3147027.26742.1, SRR3147057.3103.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780135, SAMN00780136 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001348233.1 |
CDS | 77..982 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa71060 | |
Clone ID Related Accession (Same CDS sequence) | NM_001361305.1 | |
Accession Version | NM_001361305.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 741bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1536595200000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100278107 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EU960757.1. Transcript Variant: This variant (2) has the intermediate length intron due to splice acceptor choice. ##Evidence-Data-START## Transcript exon combination :: EU960757.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780139, SAMN00780142 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001348234.1 |
CDS | 93..833 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa69001 | |
Clone ID Related Accession (Same CDS sequence) | XM_023300758.1 , NM_001361304.1 | |
Accession Version | XM_023300758.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 906bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100278107 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024466.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_023156526.1 |
CDS | 102..1007 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27112 | |
Clone ID Related Accession (Same CDS sequence) | NM_001361306.1 , XM_023300756.1 | |
Accession Version | NM_001361306.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2958bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1536595200000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100278107 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EU960757.1, EU971976.1, DV021844.1, LPUQ01001522.1, GECR01024682.1, DV502526.1 and GECR01010657.1. On Mar 28, 2018 this sequence version replaced XM_023300756.1. Transcript Variant: This variant (3) has the longest intron due to splice acceptor choice. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN01096209, SAMN08026697 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001348235.1 |
CDS | 93..3050 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27112 | |
Clone ID Related Accession (Same CDS sequence) | NM_001361306.1 , XM_023300756.1 | |
Accession Version | XM_023300756.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2958bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100278107 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024466.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_023156524.1 |
CDS | 101..3058 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27113 | |
Clone ID Related Accession (Same CDS sequence) | XM_023300757.1 | |
Accession Version | XM_023300757.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2844bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1513440000000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100278107 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024466.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_023156525.1 |
CDS | 102..2945 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCCGATC CCGCCGCCGG AGGCGCCATG GTCCCCGCTG CCGGAGGCGG CAGCGTGTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa64848 | |
Clone ID Related Accession (Same CDS sequence) | XM_020542023.1 | |
Accession Version | XM_020542023.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2316bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1489852800000 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100278107 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024466.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## |
1 | ATGTACACGG TGAAGGGGAA GGGATCTAAC ATGAAAGATT CCGATGGTAC ATCACTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_020397612.1 |
CDS | 1..2316 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTACACGG TGAAGGGGAA GGGATCTAAC ATGAAAGATT CCGATGGTAC ATCACTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Insights into corn genes derived from large-scale cDNA sequencing. |