Gene Symbol | TRIM21 |
Entrez Gene ID | 100302538 |
Full Name | tripartite motif containing 21 |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
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ORF » Species Summary » Sus scrofa » TRIM21 cDNA ORF clone
Gene Symbol | TRIM21 |
Entrez Gene ID | 100302538 |
Full Name | tripartite motif containing 21 |
Gene Type | protein-coding |
Organism | Sus scrofa(pig) |
mRNA | Protein | Name |
---|---|---|
XM_005656621.2 | XP_005656678.1 | E3 ubiquitin-protein ligase TRIM21 isoform X1 |
XM_005656621.3 | XP_005656678.2 | E3 ubiquitin-protein ligase TRIM21 isoform X1 |
XM_005656620.2 | XP_005656677.1 | E3 ubiquitin-protein ligase TRIM21 isoform X1 |
XM_005656620.3 | XP_005656677.2 | E3 ubiquitin-protein ligase TRIM21 isoform X1 |
NM_001163649.2 | NP_001157121.1 | E3 ubiquitin-protein ligase TRIM21 |
Swine TRIM21 restricts FMDV infection via an intracellular neutralization mechanism.
Fan W, Zhang D, Qian P, Qian S, Wu M, Chen H, Li X
Antiviral research12732-40(2016 Mar)
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following TRIM21 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the TRIM21 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSe28320 | |
Clone ID Related Accession (Same CDS sequence) | NM_001163649.2 | |
Accession Version | NM_001163649.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1410bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1487347200000 | |
Organism | Sus scrofa(pig) | |
Product | E3 ubiquitin-protein ligase TRIM21 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from GQ245762.1. On Aug 30, 2012 this sequence version replaced NM_001163649.1. ##Evidence-Data-START## Transcript exon combination :: GQ245762.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1876824, SAMEA3179989 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001157121.1 |
CDS | 35..1444 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe15898 | |
Clone ID Related Accession (Same CDS sequence) | XM_005656621.2 , XM_005656620.2 | |
Accession Version | XM_005656621.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1410bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1441814400000 | |
Organism | Sus scrofa(Pig) | |
Product | E3 ubiquitin-protein ligase TRIM21 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003535492.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005656621.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005656678.1 |
CDS | 236..1645 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe15898 | |
Clone ID Related Accession (Same CDS sequence) | XM_005656621.2 , XM_005656620.2 | |
Accession Version | XM_005656620.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1410bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1441814400000 | |
Organism | Sus scrofa(Pig) | |
Product | E3 ubiquitin-protein ligase TRIM21 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003535492.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005656620.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005656677.1 |
CDS | 153..1562 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe225033 | |
Clone ID Related Accession (Same CDS sequence) | XM_005656621.3 , XM_005656620.3 | |
Accession Version | XM_005656621.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1380bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | E3 ubiquitin-protein ligase TRIM21 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010451.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005656621.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005656678.2 |
CDS | 254..1633 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSe225033 | |
Clone ID Related Accession (Same CDS sequence) | XM_005656621.3 , XM_005656620.3 | |
Accession Version | XM_005656620.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1380bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1494518400000 | |
Organism | Sus scrofa(pig) | |
Product | E3 ubiquitin-protein ligase TRIM21 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010451.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005656620.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005656677.2 |
CDS | 194..1573 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCCTCAG CACTGCCCTT GGCAAGGATG TGGGATGAGG TCACGTGCTC CATCTGCCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Swine TRIM21 restricts FMDV infection via an intracellular neutralization mechanism. |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |