Gene Symbol | LOC100930980 |
Entrez Gene ID | 100930980 |
Full Name | H-2 class II histocompatibility antigen, E-S beta chain |
Synonyms | SAHA-DAB |
Gene Type | protein-coding |
Organism | Sarcophilus harrisii(Tasmanian devil) |
ORF » Species Summary » Sarcophilus harrisii » LOC100930980 cDNA ORF clone
Gene Symbol | LOC100930980 |
Entrez Gene ID | 100930980 |
Full Name | H-2 class II histocompatibility antigen, E-S beta chain |
Synonyms | SAHA-DAB |
Gene Type | protein-coding |
Organism | Sarcophilus harrisii(Tasmanian devil) |
mRNA | Protein | Name |
---|---|---|
XM_031964853.1 | XP_031820713.1 | rano class II histocompatibility antigen, A beta chain isoform X2 |
XM_012550346.2 | XP_012405800.2 | H-2 class II histocompatibility antigen, E-S beta chain |
XM_012550346.1 | XP_012405800.1 | HLA class II histocompatibility antigen, DRB1-15 beta chain |
XM_012550346.3 | XP_012405800.3 | rano class II histocompatibility antigen, A beta chain isoform X1 |
Characterization of major histocompatibility complex class I and class II genes from the Tasmanian devil (Sarcophilus harrisii).
Siddle HV, Sanderson C, Belov K
Immunogenetics59(9)753-60(2007 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100930980 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100930980 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OSa132939 | |
Clone ID Related Accession (Same CDS sequence) | XM_012550346.1 | |
Accession Version | XM_012550346.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 801bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1431532800000 | |
Organism | Sarcophilus harrisii(Tasmanian devil) | |
Product | HLA class II histocompatibility antigen, DRB1-15 beta chain | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003842940.1) and transcript sequence (EF591104.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sarcophilus harrisii Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 370 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## |
1 | ATGGGGTGTG TCTTGCTCCC CAAGGAAGTC CGGATAGAAG TTCTGGCTGT GACCCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012405800.1 |
CDS | 1..801 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGGGTGTG TCTTGCTCCC CAAGGAAGTC CGGATAGAAG TTCTGGCTGT GACCCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSa155788 | |
Clone ID Related Accession (Same CDS sequence) | XM_012550346.2 | |
Accession Version | XM_012550346.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 801bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1515513600000 | |
Organism | Sarcophilus harrisii(Tasmanian devil) | |
Product | H-2 class II histocompatibility antigen, E-S beta chain | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003842940.1) and transcript sequence (GEDN01144576.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jan 11, 2018 this sequence version replaced XM_012550346.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sarcophilus harrisii Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 452 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## |
1 | ATGGGGTGTG TCTTGCTCCC CAAGGAAGTC TGGATAGAAG TTCTGGCTGT GACCCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012405800.2 |
CDS | 83..883 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGGGTGTG TCTTGCTCCC CAAGGAAGTC TGGATAGAAG TTCTGGCTGT GACCCTGCTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSa232987 | |
Clone ID Related Accession (Same CDS sequence) | XM_012550346.3 | |
Accession Version | XM_012550346.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 399bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1577635200000 | |
Organism | Sarcophilus harrisii(Tasmanian devil) | |
Product | rano class II histocompatibility antigen, A beta chain isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045429.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Dec 31, 2019 this sequence version replaced XM_012550346.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sarcophilus harrisii Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTCCCC TGGGACACCA CAACCTGCTT GTCTGCTCCG TCAGCGGTTT CTATCCCGGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012405800.3 |
CDS | 495..893 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTCCCC TGGGACACCA CAACCTGCTT GTCTGCTCCG TCAGCGGTTT CTATCCCGGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OSa232988 | |
Clone ID Related Accession (Same CDS sequence) | XM_031964853.1 | |
Accession Version | XM_031964853.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 399bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1577635200000 | |
Organism | Sarcophilus harrisii(Tasmanian devil) | |
Product | rano class II histocompatibility antigen, A beta chain isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045429.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sarcophilus harrisii Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTCCCC TGGGACACCA CAACCTGCTT GTCTGCTCCG TCAGCGGTTT CTATCCCGGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_031820713.1 |
CDS | 502..900 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTCCCC TGGGACACCA CAACCTGCTT GTCTGCTCCG TCAGCGGTTT CTATCCCGGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Characterization of major histocompatibility complex class I and class II genes from the Tasmanian devil (Sarcophilus harrisii). |