POPTR_0006s21160g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

The following POPTR_0006s21160g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0006s21160g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa14229 XM_002308308.2
Latest version!
Populus trichocarpa hypothetical protein (POPTR_0006s21160g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 19-21 $727.30
$1039.00
OPa431450 XM_002308308.3
Latest version!
Populus trichocarpa splicing factor 3B subunit 3 (LOC7455620), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 19-21 $727.30
$1039.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    CloneID OPa14229
    Clone ID Related Accession (Same CDS sequence) XM_002308308.2
    Accession Version XM_002308308.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 4194bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008472). On Dec 16, 2013 this sequence version replaced XM_002308308.1. COMPLETENESS: incomplete on the 3' end.

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    ATGGCAGTAT CAGAGGAAGA GTGCTCTAAT GCAAAGGTCA GATCATCATC ATCACCATCT 
    TCTTCTTCAT CCTCTGCGCC ATCTAACGGC GTTCACTACT TAGCTAAGTC CGTTCTGAGA
    GGCAGCGCTG TTTTACACGC TATTTACGGT CACTTCCGTT CTTCGTTCTC TTACGACATC
    GTTTTTGGCA AGGAGACGTC AATAGAGTTG GCGATAATAG GGGAAGATGG AATTGTACAG
    GCAATATGTG AACAACCTTT ATTTGGCACG ATTAAAGATA TGGCTGTTGT ACCTTGGAAT
    GACAAGTTCC ATGCGCAGAC TCCACGGGTG CAAGGAAAAG ACCATTTGGT TGTTATATCT
    GATTCTGGGA AGCTTACATT TCTCACATTT TGCAATGAAA TGCACAGGTT TTTTCCGTTG
    ACACACATTC AACTTTCGAA TCCTGGAAAC TCAAGACATC AACTTGGAAG AATGCTAGCC
    GTAGATTCCA GTGGCTGTTT TGTCGCTACT AGCGCATATG AAGACCAATT GGCTTTGTTT
    TCCCTTTCAG CATCTGGTGG CAGTGAGATC ATTGATGAGA GAATTCTTTA TCCTCCTGAA
    AATGAAGGGA ATGCAAATGT TGCCAGAAGT ATCCAGAGAC CACTCACATC TGGTACCATA
    TGGAGTATGT GCTTCATTTC GAGGGATTCT AGCCATCCAA GTAAGGAGCA TAATCCTGTA
    CTAGCCATTA TTCTAAATAG GAGGGGAGCG CTCCTAAATG AACTGCTGTT ATTGAGATGG
    GACATTAGAG ACCATGCTAT AAGCTATATT TCGCAGTTTG TTGAATCTGG ACCGCTAGCG
    CATGACATCG TTGAAGTTCC TCATTCCAAT GGATTTGCCC TTATGTTCAG GGTTGGTGAT
    GTTCTCCTAA TGGATCTTAG AGATGCTCTC CACCCACGTT GTGTCTGTAG AACAAGCTTG
    AATTATTTTC CCAATGCAGT GGAGGAGCAG AATTTTGTTG AAGACAGTAG AGTTACTGAT
    TTTGATGAAG ATGGTTCATT TAATGTTGCT GCACGTGCTT TACTGGAGCT TCAAGATTAT
    GATCCCATGT GTATTGATGG TGAAGGGAGC AATGTAAAAT CAACTTTGAA ACATGCATGC
    TCTTGGAGCT GGGAGCCAGA TAATGATAAA AACCCTAGGA TGGTTTTTTG TGCGGACACA
    GGAGAATTTT TCATGATTGA GATTTCTTAT GACGGGGAAG ATCTTAAAGT TAATCTTTCA
    GATTGTCTTT ACAAAGACCT ATCATGTAAG ACACTTTTGT GGGTTGATGA TGGATTCCTG
    GCAGCTCTTG TGGAGATGGG AGATGGGATT GTCCTGAAAA TGGAAAATGA AAGCCTACAA
    TATATAAGTC CTATTCAAAA TGTTGCACCC ATCTTGGATA TGTCCATCGT GGATTATCAT
    GATGAGGAGC GTGATCAAAT GTTTGCCTGC TGTGGGGTCG CACCTGAGGG GTCATTAAGG
    ATTATTAGAA GTGGTATCAT TGTTGAAAAG CTACTGAAGA CTGCCCCTAT ATATCAAGGC
    ATTACTGGGA CCTGGACTGT TGGAATGAAA GTAGCTGATT TGCATCATTC TTTTCTTGTT
    CTATCATTTG TTGAAGAGAC TAGGGTACTC TCAGTTGGAT TAAGTTTTAC TGATGTGACG
    GATTTGGTTG GTTTTCAGCC TGATGTCTGT ACTCTGGCAT GTGGTCTGGT AGGTGATGGG
    TTGCTGGTCC AAATTCATCA AACTGCAGTT AGACTTTGTT TGCCTACCAG GGCTGCCCAT
    CCAGAAGGTA TTCCTTTGTC TTCCCCAGTT TGCTCATCTT GGTTTCCAGC TAACATGGGT
    ATCAATTTGG GGGCTGTTGG ACATGACCTG ATTGTTGTTT CTACTTCTAA TCCTTGTTTC
    CTATATATTC TCGGGGTGAG ATGTCTTTCA CCATTTCATT ACGAAATATT TGAAATGCAA
    CATTTGAGAT TGCTGAATGA GTTATCCTGC ATCTCCATTC CTCAAAAATA TTTTGAGCGA
    AGACGATCAA GTTTTATGAA TCATGCGGTT GGTAGTTGTG CAGCTGCCCT TCCAGTTGGG
    GTTGACACTG GCAATACCTT TGTTATCGGG ACACATAAAC CTTCAGTGGA AGTTGTGTCT
    TTTGTGCCTG GTGATGGCCT AAGAATTATT GCTTCTGGAA CAATATCATT AACAAGTTCT
    TTGGGAACCA CTGTTAGTGG TTGCATCCCT CAAGATGTAA GGCTTGTACT GGCTGATCGG
    TTTTATGTTC TTTCTGGTTT AAGGAATGGA ATGTTGCTTC GATTTGAATG GCCTTCTGCC
    TCTTCAATGT TTTCAGTGGA AATTCCCAGT CATGGATGTT CTATTGGTTC CTGCATGCTA
    AGTTCTGATA CTGCTATATC AAATACAGCT GCAATTTCTT TAGAGCCAAA AATGCTTGCT
    GTCGATTCAA TTGACAACAC AATGGATGAC CTTCCTATTA ATCTGCAATT GATTGCCACC
    CGTCGCATTG GCATTACTCC TGTTTTCCTG GTTCCTTTGA GTGATTCTCT TGACTCAGAT
    ATGATTGCTC TCAGTGATCG GCCATGGTTA TTGCACGCTG CGAGGCACAG CCTCTCTTAC
    ACTTCAATCT CCTTTCAGCC TTCAACACAT GCAACACCTG TATGCTCTGT TGAATGCCCG
    AAGGGAATTT TATTTGTTGC AGACAACAGT CTTCATTTGG TGGAAATGGT GCATAGCACG
    AGGCTTAATG TGCAGAAGTT TCATCTTGGA GGCACTCCAC GGAAGGTCCA GTACCATAGT
    GAAAGCAAGT TGTTACTTGT TATGAGGACT GAACTAAGCA ATGACAATGA TACATGTTCA
    TCTGATATAT GTTGTGTTGA CCCCCTGAGT GGTTCAACTG TGTCATCATT TAAACTTGAA
    CGTGGAGAAA CAGGAAAATC CATGGAGCTG GTGAAGATTG GAAATGAACA GGTTCTGGTA
    ATTGGAACCA GTCTGTCTTC TGGCCCAGCT ATTATGCCTA GTGGTGAAGC TGAAAGTACC
    AAGGGCCGAG TAATAGTCCT CTGCCTAGAA AACTTGCAAA ATTCAGATAG TGGCTCAATG
    ACATTCTGCT CAAAGGCAGG GTCATCTTCT CAACGAACAT CACCATTTCG TGAAATTGTT
    GGTTATGCTG CTGAGCAGCT ATCAAGCAGT AGTCTTTGCA GTAGCCCAGA TGATACTAGC
    TGCGATGGAG TCAAACTTGA AGAAACTGAA ACATGGCAGT TGCGATTTGT TTCTGCCACA
    ACATTGCCTG GAATGGTGCT TGCGATTTGT CCATATCTTG ACCGTTTTTT CTTGGCTTCT
    GCTGGTAATT CTTTTTATGT ATGTGGTTTC GCAAATGATA ATAAAAGAGT GAAAAAGTTT
    GCTGTTGGAA GGACACGTTT TATGATAATG TCCTTGACTG CATATCACAC CAGAATTGCT
    GTTGGTGATT GCCGCGATGG TATCCTTTTC TATGCTTATC ATGTGGAGTC CAAAAAACTG
    GAGCAACTTT ATTGTGACCC GTCTCAGAGA TTAGTTGCTG GTTGTGTCCT TATGGATGTT
    GATACAGCAG TGGTTTCAGA TCGGAAGGGA AGCATTGCTG TGTTGTCACG TTCTGATCGA
    TTTGAGTGTA CTGGAAGTCC AGAATGCAAC TTGACATTGA ATTGTGCTTA TTATATGGGT
    GAGATAGCAA TGAGCATCAG GAAGGGATCA TTTACATATA AACTCCCTGC TGATGATATA
    TTAACGGGGT GTGATGGTGT TATTACAAAG ATGGATGCAT CTAACAATAC TATCGTGGCC
    AGCACACTCT TAGGAAGCAT AATAGTTTTT ATTCCTCTAT CAAGGGAAGA ATTTGAACTT
    CTACAAGCTG TCCAATCTAG ACTTGTGGTC CATCCCTTAA CTGCTCCTGT TTTAGGAAAT
    GATCATCATG AGTTCCGAAG CCGTGAAAAC CCTGTTGGAG TGCCCAAGAT ACTTGACGGC
    GACATGCTAG CTCAGTTCCT GGAGCTAACG AGTTCACAGC AAGAGGCAGT GTTATCATTA
    CCTCTTGGAC CACCAGATAC AATTAAAACA AATTTAAAAC CATTTTCTAC CTTGCCCATA
    TCAATTAGTC AGGTTGTGCA ACTTCTTGAG CGGGTTCATT ATGCCCTCAA TTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002308344.2
    CDS223..4416
    Translation

    Target ORF information:

    RefSeq Version XM_002308308.2
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0006s21160g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_002308308.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    ATGGCAGTAT CAGAGGAAGA GTGCTCTAAT GCAAAGGTCA GATCATCATC ATCACCATCT 
    TCTTCTTCAT CCTCTGCGCC ATCTAACGGC GTTCACTACT TAGCTAAGTC CGTTCTGAGA
    GGCAGCGCTG TTTTACACGC TATTTACGGT CACTTCCGTT CTTCGTTCTC TTACGACATC
    GTTTTTGGCA AGGAGACGTC AATAGAGTTG GCGATAATAG GGGAAGATGG AATTGTACAG
    GCAATATGTG AACAACCTTT ATTTGGCACG ATTAAAGATA TGGCTGTTGT ACCTTGGAAT
    GACAAGTTCC ATGCGCAGAC TCCACGGGTG CAAGGAAAAG ACCATTTGGT TGTTATATCT
    GATTCTGGGA AGCTTACATT TCTCACATTT TGCAATGAAA TGCACAGGTT TTTTCCGTTG
    ACACACATTC AACTTTCGAA TCCTGGAAAC TCAAGACATC AACTTGGAAG AATGCTAGCC
    GTAGATTCCA GTGGCTGTTT TGTCGCTACT AGCGCATATG AAGACCAATT GGCTTTGTTT
    TCCCTTTCAG CATCTGGTGG CAGTGAGATC ATTGATGAGA GAATTCTTTA TCCTCCTGAA
    AATGAAGGGA ATGCAAATGT TGCCAGAAGT ATCCAGAGAC CACTCACATC TGGTACCATA
    TGGAGTATGT GCTTCATTTC GAGGGATTCT AGCCATCCAA GTAAGGAGCA TAATCCTGTA
    CTAGCCATTA TTCTAAATAG GAGGGGAGCG CTCCTAAATG AACTGCTGTT ATTGAGATGG
    GACATTAGAG ACCATGCTAT AAGCTATATT TCGCAGTTTG TTGAATCTGG ACCGCTAGCG
    CATGACATCG TTGAAGTTCC TCATTCCAAT GGATTTGCCC TTATGTTCAG GGTTGGTGAT
    GTTCTCCTAA TGGATCTTAG AGATGCTCTC CACCCACGTT GTGTCTGTAG AACAAGCTTG
    AATTATTTTC CCAATGCAGT GGAGGAGCAG AATTTTGTTG AAGACAGTAG AGTTACTGAT
    TTTGATGAAG ATGGTTCATT TAATGTTGCT GCACGTGCTT TACTGGAGCT TCAAGATTAT
    GATCCCATGT GTATTGATGG TGAAGGGAGC AATGTAAAAT CAACTTTGAA ACATGCATGC
    TCTTGGAGCT GGGAGCCAGA TAATGATAAA AACCCTAGGA TGGTTTTTTG TGCGGACACA
    GGAGAATTTT TCATGATTGA GATTTCTTAT GACGGGGAAG ATCTTAAAGT TAATCTTTCA
    GATTGTCTTT ACAAAGACCT ATCATGTAAG ACACTTTTGT GGGTTGATGA TGGATTCCTG
    GCAGCTCTTG TGGAGATGGG AGATGGGATT GTCCTGAAAA TGGAAAATGA AAGCCTACAA
    TATATAAGTC CTATTCAAAA TGTTGCACCC ATCTTGGATA TGTCCATCGT GGATTATCAT
    GATGAGGAGC GTGATCAAAT GTTTGCCTGC TGTGGGGTCG CACCTGAGGG GTCATTAAGG
    ATTATTAGAA GTGGTATCAT TGTTGAAAAG CTACTGAAGA CTGCCCCTAT ATATCAAGGC
    ATTACTGGGA CCTGGACTGT TGGAATGAAA GTAGCTGATT TGCATCATTC TTTTCTTGTT
    CTATCATTTG TTGAAGAGAC TAGGGTACTC TCAGTTGGAT TAAGTTTTAC TGATGTGACG
    GATTTGGTTG GTTTTCAGCC TGATGTCTGT ACTCTGGCAT GTGGTCTGGT AGGTGATGGG
    TTGCTGGTCC AAATTCATCA AACTGCAGTT AGACTTTGTT TGCCTACCAG GGCTGCCCAT
    CCAGAAGGTA TTCCTTTGTC TTCCCCAGTT TGCTCATCTT GGTTTCCAGC TAACATGGGT
    ATCAATTTGG GGGCTGTTGG ACATGACCTG ATTGTTGTTT CTACTTCTAA TCCTTGTTTC
    CTATATATTC TCGGGGTGAG ATGTCTTTCA CCATTTCATT ACGAAATATT TGAAATGCAA
    CATTTGAGAT TGCTGAATGA GTTATCCTGC ATCTCCATTC CTCAAAAATA TTTTGAGCGA
    AGACGATCAA GTTTTATGAA TCATGCGGTT GGTAGTTGTG CAGCTGCCCT TCCAGTTGGG
    GTTGACACTG GCAATACCTT TGTTATCGGG ACACATAAAC CTTCAGTGGA AGTTGTGTCT
    TTTGTGCCTG GTGATGGCCT AAGAATTATT GCTTCTGGAA CAATATCATT AACAAGTTCT
    TTGGGAACCA CTGTTAGTGG TTGCATCCCT CAAGATGTAA GGCTTGTACT GGCTGATCGG
    TTTTATGTTC TTTCTGGTTT AAGGAATGGA ATGTTGCTTC GATTTGAATG GCCTTCTGCC
    TCTTCAATGT TTTCAGTGGA AATTCCCAGT CATGGATGTT CTATTGGTTC CTGCATGCTA
    AGTTCTGATA CTGCTATATC AAATACAGCT GCAATTTCTT TAGAGCCAAA AATGCTTGCT
    GTCGATTCAA TTGACAACAC AATGGATGAC CTTCCTATTA ATCTGCAATT GATTGCCACC
    CGTCGCATTG GCATTACTCC TGTTTTCCTG GTTCCTTTGA GTGATTCTCT TGACTCAGAT
    ATGATTGCTC TCAGTGATCG GCCATGGTTA TTGCACGCTG CGAGGCACAG CCTCTCTTAC
    ACTTCAATCT CCTTTCAGCC TTCAACACAT GCAACACCTG TATGCTCTGT TGAATGCCCG
    AAGGGAATTT TATTTGTTGC AGACAACAGT CTTCATTTGG TGGAAATGGT GCATAGCACG
    AGGCTTAATG TGCAGAAGTT TCATCTTGGA GGCACTCCAC GGAAGGTCCA GTACCATAGT
    GAAAGCAAGT TGTTACTTGT TATGAGGACT GAACTAAGCA ATGACAATGA TACATGTTCA
    TCTGATATAT GTTGTGTTGA CCCCCTGAGT GGTTCAACTG TGTCATCATT TAAACTTGAA
    CGTGGAGAAA CAGGAAAATC CATGGAGCTG GTGAAGATTG GAAATGAACA GGTTCTGGTA
    ATTGGAACCA GTCTGTCTTC TGGCCCAGCT ATTATGCCTA GTGGTGAAGC TGAAAGTACC
    AAGGGCCGAG TAATAGTCCT CTGCCTAGAA AACTTGCAAA ATTCAGATAG TGGCTCAATG
    ACATTCTGCT CAAAGGCAGG GTCATCTTCT CAACGAACAT CACCATTTCG TGAAATTGTT
    GGTTATGCTG CTGAGCAGCT ATCAAGCAGT AGTCTTTGCA GTAGCCCAGA TGATACTAGC
    TGCGATGGAG TCAAACTTGA AGAAACTGAA ACATGGCAGT TGCGATTTGT TTCTGCCACA
    ACATTGCCTG GAATGGTGCT TGCGATTTGT CCATATCTTG ACCGTTTTTT CTTGGCTTCT
    GCTGGTAATT CTTTTTATGT ATGTGGTTTC GCAAATGATA ATAAAAGAGT GAAAAAGTTT
    GCTGTTGGAA GGACACGTTT TATGATAATG TCCTTGACTG CATATCACAC CAGAATTGCT
    GTTGGTGATT GCCGCGATGG TATCCTTTTC TATGCTTATC ATGTGGAGTC CAAAAAACTG
    GAGCAACTTT ATTGTGACCC GTCTCAGAGA TTAGTTGCTG GTTGTGTCCT TATGGATGTT
    GATACAGCAG TGGTTTCAGA TCGGAAGGGA AGCATTGCTG TGTTGTCACG TTCTGATCGA
    TTTGAGTGTA CTGGAAGTCC AGAATGCAAC TTGACATTGA ATTGTGCTTA TTATATGGGT
    GAGATAGCAA TGAGCATCAG GAAGGGATCA TTTACATATA AACTCCCTGC TGATGATATA
    TTAACGGGGT GTGATGGTGT TATTACAAAG ATGGATGCAT CTAACAATAC TATCGTGGCC
    AGCACACTCT TAGGAAGCAT AATAGTTTTT ATTCCTCTAT CAAGGGAAGA ATTTGAACTT
    CTACAAGCTG TCCAATCTAG ACTTGTGGTC CATCCCTTAA CTGCTCCTGT TTTAGGAAAT
    GATCATCATG AGTTCCGAAG CCGTGAAAAC CCTGTTGGAG TGCCCAAGAT ACTTGACGGC
    GACATGCTAG CTCAGTTCCT GGAGCTAACG AGTTCACAGC AAGAGGCAGT GTTATCATTA
    CCTCTTGGAC CACCAGATAC AATTAAAACA AATTTAAAAC CATTTTCTAC CTTGCCCATA
    TCAATTAGTC AGGTTGTGCA ACTTCTTGAG CGGGTTCATT ATGCCCTCAA TTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    CloneID OPa431450
    Clone ID Related Accession (Same CDS sequence) XM_002308308.3
    Accession Version XM_002308308.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 4194bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product splicing factor 3B subunit 3
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037290.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002308308.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    ATGGCAGTAT CAGAGGAAGA GTGCTCTAAT GCAAAGGTCA GATCATCATC ATCACCATCT 
    TCTTCTTCAT CCTCTGCGCC ATCTAACGGC GTTCACTACT TAGCTAAGTC CGTTCTGAGA
    GGCAGCGCTG TTTTACACGC TATTTACGGT CACTTCCGTT CTTCGTTCTC TTACGACATC
    GTTTTTGGCA AGGAGACGTC AATAGAGTTG GCGATAATAG GGGAAGATGG AATTGTACAG
    GCAATATGTG AACAACCTTT ATTTGGCACG ATTAAAGATA TGGCTGTTGT ACCTTGGAAT
    GACAAGTTCC ATGCGCAGAC TCCACGGGTG CAAGGAAAAG ACCATTTGGT TGTTATATCT
    GATTCTGGGA AGCTTACATT TCTCACATTT TGCAATGAAA TGCACAGGTT TTTTCCGTTG
    ACACACATTC AACTTTCGAA TCCTGGAAAC TCAAGACATC AACTTGGAAG AATGCTAGCC
    GTAGATTCCA GTGGCTGTTT TGTTGCTACT AGCGCATATG AAGACCAATT GGCTTTGTTT
    TCCCTTTCAG CATCTGGTGG CAGTGAGATC ATTGATGAGA GAATTCTTTA TCCTCCTGAA
    AATGAAGGGA ATGCAAATGT TGCCAGAAGT ATCCAGAGAC CACTCACATC TGGTACCATA
    TGGAGTATGT GCTTCATTTC GAGGGATTCT AGCCATCCAA GTAAGGAGCA TAATCCTGTA
    CTAGCCATTA TTCTAAATAG GAGGGGAGCG CTCCTAAATG AACTGCTGTT ATTGAGATGG
    GACATTAGAG ACCATGCTAT AAGCTATATT TCGCAGTTTG TTGAATCTGG ACCGCTAGCG
    CATGACATCG TTGAAGTTCC TCATTCCAAT GGATTTGCCC TTATGTTCAG GGTTGGTGAT
    GTTCTCCTAA TGGATCTTAG AGATGCTCTC CACCCACGTT GTGTCTGTAG AACAAGCTTG
    AATTATTTTC CCAATGCAGT GGAGGAGCAG AATTTTGTTG AAGACAGTAG AGTTACTGAT
    TTTGATGAAG ATGGTTCATT TAATGTTGCT GCACGTGCTT TACTGGAGCT TCAAGATTAT
    GATCCCATGT GTATTGATGG TGAAGGGAGC AATGTAAAAT CAACTTTGAA ACATGCATGC
    TCTTGGAGCT GGGAGCCAGA TAATGATAAA AACCCTAGGA TGGTTTTTTG TGCGGACACA
    GGAGAATTTT TCATGATTGA GATTTCTTAT GACGGGGAAG ATCTTAAAGT TAATCTTTCA
    GATTGTCTTT ACAAAGACCT ATCATGTAAG ACACTTTTGT GGGTTGATGA TGGATTCCTG
    GCAGCTCTTG TGGAGATGGG AGATGGGATT GTCCTGAAAA TGGAAAATGA AAGCCTACAA
    TATATAAGTC CTATTCAAAA TGTTGCACCC ATCTTGGATA TGTCCATCGT GGATTATCAT
    GATGAGGAGC GTGATCAAAT GTTTGCCTGC TGTGGGGTCG CACCTGAGGG GTCATTAAGG
    ATTATTAGAA GTGGTATCAT TGTTGAAAAG CTACTGAAGA CTGCCCCTAT ATATCAAGGC
    ATTACTGGGA CCTGGACTGT TGGAATGAAA GTAGCTGATT TGCATCATTC TTTTCTTGTT
    CTATCATTTG TTGAAGAGAC TAGGGTACTC TCAGTTGGAT TAAGTTTTAC TGATGTGACG
    GATTTGGTTG GTTTTCAGCC TGATGTCTGT ACTCTGGCAT GTGGTCTGGT AGGTGATGGG
    TTGCTGGTCC AAATTCATCA AACTGCAGTT AGACTTTGTT TGCCTACCAG GGCTGCCCAT
    CCAGAAGGTA TTCCTTTGTC TTCCCCAGTT TGCTCATCTT GGTTTCCAGC TAACATGGGT
    ATCAATTTGG GGGCTGTTGG ACATGACCTG ATTGTTGTTT CTACTTCTAA TCCTTGTTTC
    CTATATATTC TCGGGGTGAG ATGTCTTTCA CCATTTCATT ACGAAATATT TGAAATGCAA
    CATTTGAGAT TGCTGAATGA GTTATCCTGC ATCTCCATTC CTCAAAAATA TTTTGAGCGA
    AGACGATCAA GTTTTATGAA TCATGCGGTT GGTAGTTGTG CAGCTGCCCT TCCAGTTGGG
    GTTGACACTG GCAATACCTT TGTTATCGGG ACACATAAAC CTTCAGTGGA AGTTGTGTCT
    TTTGTGCCTG GTGATGGCCT AAGAATTATT GCTTCTGGAA CAATATCATT AACAAGTTCT
    TTGGGAACCA CTGTTAGTGG TTGCATCCCT CAAGATGTAA GGCTTGTACT GGCTGATCGG
    TTTTATGTTC TTTCTGGTTT AAGGAATGGA ATGTTGCTTC GATTTGAATG GCCTTCTGCC
    TCTTCAATGT TTTCAGTGGA AATTCCCAGT CATGGATGTT CTATTGGTTC CTGCATGCTA
    AGTTCTGATA CTGCTATATC AAATACAGCT GCAATTTCTT TAGAGCCAAA AATGCTTGCT
    GTCGATTCAA TTGACAACAC AATGGATGAC CTTCCTATTA ATCTGCAATT GATTGCCACC
    CGTCGCATTG GCATTACTCC TGTTTTCCTG GTTCCTTTGA GTGATTCTCT TGACTCAGAT
    ATGATTGCTC TCAGTGATCG GCCATGGTTA TTGCACGCTG CGAGGCACAG CCTCTCTTAC
    ACTTCAATCT CCTTTCAGCC TTCAACACAT GCAACACCTG TATGCTCTGT TGAATGCCCG
    AAGGGAATTT TATTTGTTGC AGACAACAGT CTTCATTTGG TGGAAATGGT GCATAGCACG
    AGGCTTAATG TGCAGAAGTT TCATCTTGGA GGCACTCCAC GGAAGGTCCA GTACCATAGT
    GAAAGCAAGT TGTTACTTGT TATGAGGACT GAACTAAGCA ATGACAATGA TACATGTTCA
    TCTGATATAT GTTGTGTTGA CCCCCTGAGT GGTTCAACTG TGTCATCATT TAAACTTGAA
    CGTGGAGAAA CAGGAAAATC CATGGAGCTG GTGAAGATTG GAAATGAACA GGTTCTGGTA
    ATTGGAACCA GTCTGTCTTC TGGCCCAGCT ATTATGCCTA GTGGTGAAGC CGAAAGTACC
    AAGGGCCGAG TAATAGTCCT CTGCCTAGAA AACTTGCAAA ATTCAGATAG TGGCTCAATG
    ACATTCTGCT CAAAGGCAGG GTCATCTTCT CAACGAACAT CACCATTTCG TGAAATTGTT
    GGTTATGCTG CTGAGCAGCT ATCAAGCAGT AGTCTTTGCA GTAGCCCAGA TGATACTAGC
    TGCGATGGAG TCAAACTTGA AGAAACTGAA ACATGGCAGT TGCGATTTGT TTCTGCCACA
    ACATTGCCTG GAATGGTGCT TGCGATTTGT CCATATCTTG ACCGTTTTTT CTTGGCTTCT
    GCTGGTAATT CTTTTTATGT ATGTGGTTTC GCAAATGATA ATAAAAGAGT GAAAAAGTTT
    GCTGTTGGAA GGACACGTTT TATGATAATG TCCTTGACTG CATATCACAC CAGAATTGCT
    GTTGGTGATT GCCGCGATGG TATCCTTTTC TATGCTTATC ATGTGGAGTC CAAAAAACTG
    GAGCAACTTT ATTGTGACCC GTCTCAGAGA TTAGTTGCTG GTTGTGTCCT TATGGATGTT
    GATACAGCAG TGGTTTCAGA TCGGAAGGGA AGCATTGCTG TGTTGTCACG TTCTGATCGA
    TTTGAGTGTA CTGGAAGTCC AGAATGCAAC TTGACATTGA ATTGTGCTTA TTATATGGGT
    GAGATAGCAA TGAGCATCAG GAAGGGATCA TTTACATATA AACTCCCTGC TGATGATATA
    TTAACGGGGT GTGATGGTGT TATTACAAAG ATGGATGCAT CTAACAATAC TATCGTGGCC
    AGCACACTCT TAGGAAGCAT AATAGTTTTT ATTCCTCTAT CAAGGGAAGA ATTTGAACTT
    CTACAAGCTG TCCAATCTAG ACTTGTGGTC CATCCCTTAA CTGCTCCTGT TTTAGGAAAT
    GATCATCATG AGTTCCGAAG CCGTGAAAAC CCTGTTGGAG TGCCCAAGAT ACTTGACGGC
    GACATGCTAG CTCAGTTCCT GGAGCTAACG AGTTCACAGC AAGAGGCAGT GTTATCATTA
    CCTCTTGGAC CACCAGATAC AATTAAAACA AATTTAAAAC CATTTTCTAC CTTGCCCATA
    TCAATTAGTC AGGTTGTGCA ACTTCTTGAG CGGGTTCATT ATGCCCTCAA TTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002308344.2
    CDS217..4410
    Translation

    Target ORF information:

    RefSeq Version XM_002308308.3
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa splicing factor 3B subunit 3 (LOC7455620), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_002308308.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    ATGGCAGTAT CAGAGGAAGA GTGCTCTAAT GCAAAGGTCA GATCATCATC ATCACCATCT 
    TCTTCTTCAT CCTCTGCGCC ATCTAACGGC GTTCACTACT TAGCTAAGTC CGTTCTGAGA
    GGCAGCGCTG TTTTACACGC TATTTACGGT CACTTCCGTT CTTCGTTCTC TTACGACATC
    GTTTTTGGCA AGGAGACGTC AATAGAGTTG GCGATAATAG GGGAAGATGG AATTGTACAG
    GCAATATGTG AACAACCTTT ATTTGGCACG ATTAAAGATA TGGCTGTTGT ACCTTGGAAT
    GACAAGTTCC ATGCGCAGAC TCCACGGGTG CAAGGAAAAG ACCATTTGGT TGTTATATCT
    GATTCTGGGA AGCTTACATT TCTCACATTT TGCAATGAAA TGCACAGGTT TTTTCCGTTG
    ACACACATTC AACTTTCGAA TCCTGGAAAC TCAAGACATC AACTTGGAAG AATGCTAGCC
    GTAGATTCCA GTGGCTGTTT TGTTGCTACT AGCGCATATG AAGACCAATT GGCTTTGTTT
    TCCCTTTCAG CATCTGGTGG CAGTGAGATC ATTGATGAGA GAATTCTTTA TCCTCCTGAA
    AATGAAGGGA ATGCAAATGT TGCCAGAAGT ATCCAGAGAC CACTCACATC TGGTACCATA
    TGGAGTATGT GCTTCATTTC GAGGGATTCT AGCCATCCAA GTAAGGAGCA TAATCCTGTA
    CTAGCCATTA TTCTAAATAG GAGGGGAGCG CTCCTAAATG AACTGCTGTT ATTGAGATGG
    GACATTAGAG ACCATGCTAT AAGCTATATT TCGCAGTTTG TTGAATCTGG ACCGCTAGCG
    CATGACATCG TTGAAGTTCC TCATTCCAAT GGATTTGCCC TTATGTTCAG GGTTGGTGAT
    GTTCTCCTAA TGGATCTTAG AGATGCTCTC CACCCACGTT GTGTCTGTAG AACAAGCTTG
    AATTATTTTC CCAATGCAGT GGAGGAGCAG AATTTTGTTG AAGACAGTAG AGTTACTGAT
    TTTGATGAAG ATGGTTCATT TAATGTTGCT GCACGTGCTT TACTGGAGCT TCAAGATTAT
    GATCCCATGT GTATTGATGG TGAAGGGAGC AATGTAAAAT CAACTTTGAA ACATGCATGC
    TCTTGGAGCT GGGAGCCAGA TAATGATAAA AACCCTAGGA TGGTTTTTTG TGCGGACACA
    GGAGAATTTT TCATGATTGA GATTTCTTAT GACGGGGAAG ATCTTAAAGT TAATCTTTCA
    GATTGTCTTT ACAAAGACCT ATCATGTAAG ACACTTTTGT GGGTTGATGA TGGATTCCTG
    GCAGCTCTTG TGGAGATGGG AGATGGGATT GTCCTGAAAA TGGAAAATGA AAGCCTACAA
    TATATAAGTC CTATTCAAAA TGTTGCACCC ATCTTGGATA TGTCCATCGT GGATTATCAT
    GATGAGGAGC GTGATCAAAT GTTTGCCTGC TGTGGGGTCG CACCTGAGGG GTCATTAAGG
    ATTATTAGAA GTGGTATCAT TGTTGAAAAG CTACTGAAGA CTGCCCCTAT ATATCAAGGC
    ATTACTGGGA CCTGGACTGT TGGAATGAAA GTAGCTGATT TGCATCATTC TTTTCTTGTT
    CTATCATTTG TTGAAGAGAC TAGGGTACTC TCAGTTGGAT TAAGTTTTAC TGATGTGACG
    GATTTGGTTG GTTTTCAGCC TGATGTCTGT ACTCTGGCAT GTGGTCTGGT AGGTGATGGG
    TTGCTGGTCC AAATTCATCA AACTGCAGTT AGACTTTGTT TGCCTACCAG GGCTGCCCAT
    CCAGAAGGTA TTCCTTTGTC TTCCCCAGTT TGCTCATCTT GGTTTCCAGC TAACATGGGT
    ATCAATTTGG GGGCTGTTGG ACATGACCTG ATTGTTGTTT CTACTTCTAA TCCTTGTTTC
    CTATATATTC TCGGGGTGAG ATGTCTTTCA CCATTTCATT ACGAAATATT TGAAATGCAA
    CATTTGAGAT TGCTGAATGA GTTATCCTGC ATCTCCATTC CTCAAAAATA TTTTGAGCGA
    AGACGATCAA GTTTTATGAA TCATGCGGTT GGTAGTTGTG CAGCTGCCCT TCCAGTTGGG
    GTTGACACTG GCAATACCTT TGTTATCGGG ACACATAAAC CTTCAGTGGA AGTTGTGTCT
    TTTGTGCCTG GTGATGGCCT AAGAATTATT GCTTCTGGAA CAATATCATT AACAAGTTCT
    TTGGGAACCA CTGTTAGTGG TTGCATCCCT CAAGATGTAA GGCTTGTACT GGCTGATCGG
    TTTTATGTTC TTTCTGGTTT AAGGAATGGA ATGTTGCTTC GATTTGAATG GCCTTCTGCC
    TCTTCAATGT TTTCAGTGGA AATTCCCAGT CATGGATGTT CTATTGGTTC CTGCATGCTA
    AGTTCTGATA CTGCTATATC AAATACAGCT GCAATTTCTT TAGAGCCAAA AATGCTTGCT
    GTCGATTCAA TTGACAACAC AATGGATGAC CTTCCTATTA ATCTGCAATT GATTGCCACC
    CGTCGCATTG GCATTACTCC TGTTTTCCTG GTTCCTTTGA GTGATTCTCT TGACTCAGAT
    ATGATTGCTC TCAGTGATCG GCCATGGTTA TTGCACGCTG CGAGGCACAG CCTCTCTTAC
    ACTTCAATCT CCTTTCAGCC TTCAACACAT GCAACACCTG TATGCTCTGT TGAATGCCCG
    AAGGGAATTT TATTTGTTGC AGACAACAGT CTTCATTTGG TGGAAATGGT GCATAGCACG
    AGGCTTAATG TGCAGAAGTT TCATCTTGGA GGCACTCCAC GGAAGGTCCA GTACCATAGT
    GAAAGCAAGT TGTTACTTGT TATGAGGACT GAACTAAGCA ATGACAATGA TACATGTTCA
    TCTGATATAT GTTGTGTTGA CCCCCTGAGT GGTTCAACTG TGTCATCATT TAAACTTGAA
    CGTGGAGAAA CAGGAAAATC CATGGAGCTG GTGAAGATTG GAAATGAACA GGTTCTGGTA
    ATTGGAACCA GTCTGTCTTC TGGCCCAGCT ATTATGCCTA GTGGTGAAGC CGAAAGTACC
    AAGGGCCGAG TAATAGTCCT CTGCCTAGAA AACTTGCAAA ATTCAGATAG TGGCTCAATG
    ACATTCTGCT CAAAGGCAGG GTCATCTTCT CAACGAACAT CACCATTTCG TGAAATTGTT
    GGTTATGCTG CTGAGCAGCT ATCAAGCAGT AGTCTTTGCA GTAGCCCAGA TGATACTAGC
    TGCGATGGAG TCAAACTTGA AGAAACTGAA ACATGGCAGT TGCGATTTGT TTCTGCCACA
    ACATTGCCTG GAATGGTGCT TGCGATTTGT CCATATCTTG ACCGTTTTTT CTTGGCTTCT
    GCTGGTAATT CTTTTTATGT ATGTGGTTTC GCAAATGATA ATAAAAGAGT GAAAAAGTTT
    GCTGTTGGAA GGACACGTTT TATGATAATG TCCTTGACTG CATATCACAC CAGAATTGCT
    GTTGGTGATT GCCGCGATGG TATCCTTTTC TATGCTTATC ATGTGGAGTC CAAAAAACTG
    GAGCAACTTT ATTGTGACCC GTCTCAGAGA TTAGTTGCTG GTTGTGTCCT TATGGATGTT
    GATACAGCAG TGGTTTCAGA TCGGAAGGGA AGCATTGCTG TGTTGTCACG TTCTGATCGA
    TTTGAGTGTA CTGGAAGTCC AGAATGCAAC TTGACATTGA ATTGTGCTTA TTATATGGGT
    GAGATAGCAA TGAGCATCAG GAAGGGATCA TTTACATATA AACTCCCTGC TGATGATATA
    TTAACGGGGT GTGATGGTGT TATTACAAAG ATGGATGCAT CTAACAATAC TATCGTGGCC
    AGCACACTCT TAGGAAGCAT AATAGTTTTT ATTCCTCTAT CAAGGGAAGA ATTTGAACTT
    CTACAAGCTG TCCAATCTAG ACTTGTGGTC CATCCCTTAA CTGCTCCTGT TTTAGGAAAT
    GATCATCATG AGTTCCGAAG CCGTGAAAAC CCTGTTGGAG TGCCCAAGAT ACTTGACGGC
    GACATGCTAG CTCAGTTCCT GGAGCTAACG AGTTCACAGC AAGAGGCAGT GTTATCATTA
    CCTCTTGGAC CACCAGATAC AATTAAAACA AATTTAAAAC CATTTTCTAC CTTGCCCATA
    TCAATTAGTC AGGTTGTGCA ACTTCTTGAG CGGGTTCATT ATGCCCTCAA TTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D