ORF » Species Summary » Populus trichocarpa » POPTR_0005s04490g cDNA ORF clone

POPTR_0005s04490g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

The following POPTR_0005s04490g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0005s04490g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa13368 XM_006382630.1
Latest version!		 Populus trichocarpa hypothetical protein (POPTR_0005s04490g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OPa430642 XM_006382630.2
Latest version!		 Populus trichocarpa bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic (LOC18098873), mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    POPTR_0005s04490g ( XM_006382630.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_006382692.1 Populus trichocarpa hypothetical protein (POPTR_0005s04490g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa13368
    Clone ID Related Accession (Same CDS sequence) XM_006382630.1
    Accession Version XM_006382630.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1557bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1388332800000
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008471). COMPLETENESS: incomplete on the 5' end. 

    1
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    181
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    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGGGGAGTG TTGGAGTCCT GACAAATTCT GTAATGGTTT GTGCTCCATT AATGGCTCAA 
    TCTGTTGAGC AAATGGTGAT CGACATGCAT AGTGCAAAGG CACAAGGCGC TGATGTTGTG 
    GAGGTCAGGT TGGACTGCAT TAGCAAGTTT CAGCCTAGGC AAGACCTGGA AACCATCATC 
    AGAAACAAGC CATTGCCGGT GATCATTGTC TACAGGCCAA AGTGGGAAGG TGGGCAGTAC 
    GAAGGGGATG AGCACAGAAG GTTGGAAGCA CTTCGTTTGG CAAATGATCT GGGAGCTGAT 
    TATATTGATT TGGAGCTTAA GGTTGCCTCT GAGCTGATAT GGGAACTGAA AAACAAGCAT 
    CAGAATGGTG GGAAAGTCAT TGTATCATCT TACTTGAATG GTGCAACCCC CTCGAAAGAA 
    AATCTCAGCC ATCTTGTTGC AACCATGCAA GCTACTGAAG CAGATATCAT CAAAGTTGTT 
    TCTAATGCAG ATGATATCAC AGAAATGGAA AGGATTTTTC ATTTGCTTTC GCATTGCGAG 
    GTGCCAGCAG TTGCATACTC GGTGGGGGAG AGAGGCCTCA TAAGCCAGCT GTTGTGCCCC 
    AAATTCGGTG GTGCTTTAGT CTATGGATCC ATGGAAGGAA ATTCAATTCC TGGTTTACCT 
    ACATTAGACA GCCTTAGAGA AGCCTACAAG GTTGACTGCA TTAATTCAGA TACTAAAGTT 
    TTCGGTCTTG TTTCAAAGCC AGTTGGCCAC AGCAAAGGCC CTCTGTTGCA TAATCCTACC 
    CTGAGACATG TGAACTTTAA TGGGATCTAT GTCCCCATGT TTGTCGATGA TCTCAAGAAG 
    TTCTTTGATG TCTACGCAAG CCCTGACTTT GCTGGTTATA GTGTTGGGTT TCCATACAAG 
    GAAGCTGTCG TGCAGTTCTG TGATGAAGTC CATCCACTGG CTAAGTGTAT TGGAGCTGTT 
    AATACCATCA TAAGGAGGCC CTGTGATGGG AAACTGATAG GTTATAATAC AGACTGTGAG 
    GGTTCAATAA CTGCAATTGA GGATGCTTTG AGAGATCAGA AATACGTCAA TGGCAGATCC 
    TTAAATTCTC CGTTGGCTGG GAAACAGTTT GTGGTAGTTG GTGCTGGAGG TGCTGGAAGA 
    GCAATTGCAG TTGGAGCTAA GAGTAGAGGA GCCCGTTTAA TTATTTTCGA CATCGATCTC 
    GAGAGAGCAA AGAGTCTTGC TCGAGCTGTT TCTGGTGAAG CTCAACATTT TGAAAGTCTA 
    GCACATTTCC AGCCTGAGAA TGGGGCAATC CTTGCAAATG CAACACCGAT TGGAATGCAT 
    CCGAGTACAG ATCGAATTCC CGCGGCCGAG GAAACCTTGG GGAACTACCA ACTGGTATTC 
    GATGCTGTTT ACACACCAAG AAAAACCAGA CTATTAAAAG ATGCTGATGC AGCTGGAGCA 
    ATTACAGTGA GTGGAGTTGA GATGTTCCTC AGACAGGCCA TCGGGCAGTT CAACCTCTTC 
    ACCGGCAGAG AAGCTCCGAA GGACTTCATG CGGGAGATTG TTTTAGCCAA ATTCTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006382692.1
    CDS1..1557
    Translation

    Target ORF information:

    RefSeq Version XM_006382630.1
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0005s04490g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006382630.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGGGGAGTG TTGGAGTCCT GACAAATTCT GTAATGGTTT GTGCTCCATT AATGGCTCAA 
    TCTGTTGAGC AAATGGTGAT CGACATGCAT AGTGCAAAGG CACAAGGCGC TGATGTTGTG 
    GAGGTCAGGT TGGACTGCAT TAGCAAGTTT CAGCCTAGGC AAGACCTGGA AACCATCATC 
    AGAAACAAGC CATTGCCGGT GATCATTGTC TACAGGCCAA AGTGGGAAGG TGGGCAGTAC 
    GAAGGGGATG AGCACAGAAG GTTGGAAGCA CTTCGTTTGG CAAATGATCT GGGAGCTGAT 
    TATATTGATT TGGAGCTTAA GGTTGCCTCT GAGCTGATAT GGGAACTGAA AAACAAGCAT 
    CAGAATGGTG GGAAAGTCAT TGTATCATCT TACTTGAATG GTGCAACCCC CTCGAAAGAA 
    AATCTCAGCC ATCTTGTTGC AACCATGCAA GCTACTGAAG CAGATATCAT CAAAGTTGTT 
    TCTAATGCAG ATGATATCAC AGAAATGGAA AGGATTTTTC ATTTGCTTTC GCATTGCGAG 
    GTGCCAGCAG TTGCATACTC GGTGGGGGAG AGAGGCCTCA TAAGCCAGCT GTTGTGCCCC 
    AAATTCGGTG GTGCTTTAGT CTATGGATCC ATGGAAGGAA ATTCAATTCC TGGTTTACCT 
    ACATTAGACA GCCTTAGAGA AGCCTACAAG GTTGACTGCA TTAATTCAGA TACTAAAGTT 
    TTCGGTCTTG TTTCAAAGCC AGTTGGCCAC AGCAAAGGCC CTCTGTTGCA TAATCCTACC 
    CTGAGACATG TGAACTTTAA TGGGATCTAT GTCCCCATGT TTGTCGATGA TCTCAAGAAG 
    TTCTTTGATG TCTACGCAAG CCCTGACTTT GCTGGTTATA GTGTTGGGTT TCCATACAAG 
    GAAGCTGTCG TGCAGTTCTG TGATGAAGTC CATCCACTGG CTAAGTGTAT TGGAGCTGTT 
    AATACCATCA TAAGGAGGCC CTGTGATGGG AAACTGATAG GTTATAATAC AGACTGTGAG 
    GGTTCAATAA CTGCAATTGA GGATGCTTTG AGAGATCAGA AATACGTCAA TGGCAGATCC 
    TTAAATTCTC CGTTGGCTGG GAAACAGTTT GTGGTAGTTG GTGCTGGAGG TGCTGGAAGA 
    GCAATTGCAG TTGGAGCTAA GAGTAGAGGA GCCCGTTTAA TTATTTTCGA CATCGATCTC 
    GAGAGAGCAA AGAGTCTTGC TCGAGCTGTT TCTGGTGAAG CTCAACATTT TGAAAGTCTA 
    GCACATTTCC AGCCTGAGAA TGGGGCAATC CTTGCAAATG CAACACCGAT TGGAATGCAT 
    CCGAGTACAG ATCGAATTCC CGCGGCCGAG GAAACCTTGG GGAACTACCA ACTGGTATTC 
    GATGCTGTTT ACACACCAAG AAAAACCAGA CTATTAAAAG ATGCTGATGC AGCTGGAGCA 
    ATTACAGTGA GTGGAGTTGA GATGTTCCTC AGACAGGCCA TCGGGCAGTT CAACCTCTTC 
    ACCGGCAGAG AAGCTCCGAA GGACTTCATG CGGGAGATTG TTTTAGCCAA ATTCTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0005s04490g ( XM_006382630.2 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_006382692.1 Populus trichocarpa bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic (LOC18098873), mRNA.
    Price & Availability↑
    CloneID OPa430642
    Clone ID Related Accession (Same CDS sequence) XM_006382630.2
    Accession Version XM_006382630.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1557bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 1523116800000
    Organism Populus trichocarpa(black cottonwood)
    Product bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037289.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_006382630.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGGGGAGTG TTGGAGTCCT GACAAATTCT GTAATGGTTT GTGCTCCATT AATGGCTCAA 
    TCTGTTGAGC AAATGGTGAT CGACATGCAT AGTGCAAAGG CACAAGGCGC TGATGTTGTG 
    GAGGTCAGGT TGGACTGCAT TAGCAAGTTT CAGCCTAGGC AAGACCTGGA AACCATCATC 
    AGAAACAAGC CATTGCCGGT GATCATTGTC TACAGGCCAA AGTGGGAAGG TGGGCAGTAC 
    GAAGGGGATG AGCACAGAAG GTTGGAAGCA CTTCGTTTGG CAAATGATCT GGGAGCTGAT 
    TATATTGATT TGGAGCTTAA GGTTGCCTCT GAGCTGATAT GGGAACTGAA AAACAAGCAT 
    CAGAATGGTG GGAAAGTCAT TGTATCATCT TACTTGAATG GTGCAACCCC CTCGAAAGAA 
    AATCTCAGCC ATCTTGTTGC AACCATGCAA GCTACTGAAG CAGATATCAT CAAAGTTGTT 
    TCTAATGCAG ATGATATCAC AGAAATGGAA AGGATTTTTC ATTTGCTTTC GCATTGCGAG 
    GTGCCAGCAG TTGCATACTC TGTGGGGGAG AGAGGCCTCA TAAGCCAGCT GTTGTGCCCC 
    AAATTCGGTG GTGCTTTAGT CTATGGATCC ATGGAAGGAA ATTCAATTCC TGGTTTACCT 
    ACATTAGACA GCCTTAGAGA AGCCTACAAG GTTGACTGCA TTAATTCAGA TACTAAAGTT 
    TTCGGTCTTG TTTCAAAGCC AGTTGGCCAC AGCAAAGGCC CTCTGTTGCA TAATCCTACC 
    CTGAGACATG TGAACTTTAA TGGGATCTAT GTCCCCATGT TTGTCGATGA TCTCAAGAAG 
    TTCTTTGATG TCTACGCAAG CCCTGACTTT GCTGGTTATA GTGTTGGGTT TCCATACAAG 
    GAAGCTGTCG TGCAGTTCTG TGATGAAGTC CATCCACTGG CTAAGTGTAT TGGAGCTGTT 
    AATACCATCA TAAGGAGGCC CTGTGATGGG AAACTGATAG GTTATAATAC AGACTGTGAG 
    GGTTCAATAA CTGCAATTGA GGATGCTTTG AGAGATCAGA AATACGTCAA TGGCAGATCC 
    TTAAATTCTC CGTTGGCTGG GAAACAGTTT GTGGTAGTTG GTGCTGGAGG TGCTGGAAGA 
    GCAATTGCAG TTGGAGCTAA GAGTAGAGGA GCCCGTTTAA TTATTTTCGA CATCGATCTC 
    GAGAGAGCAA AGAGTCTTGC TCGAGCTGTT TCTGGTGAAG CTCAACATTT TGAAAGTCTA 
    GCACATTTCC AGCCTGAGAA TGGGGCAATC CTTGCAAATG CAACACCGAT TGGAATGCAT 
    CCGAGTACAG ATCGAATTCC CGCGGCCGAG GAAACCTTGG GGAACTACCA ACTGGTATTC 
    GATGCTGTTT ACACACCAAG AAAAACCAGA CTATTAAAAG ATGCTGATGC AGCTGGAGCA 
    ATTACAGTGA GTGGAGTTGA GATGTTCCTC AGACAGGCCA TCGGGCAGTT CAACCTCTTC 
    ACCGGCAGAG AAGCTCCGAA GGACTTCATG CGGGAGATTG TTTTAGCCAA ATTCTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_006382692.1
    CDS262..1818
    Translation

    Target ORF information:

    RefSeq Version XM_006382630.2
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic (LOC18098873), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_006382630.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGGGGAGTG TTGGAGTCCT GACAAATTCT GTAATGGTTT GTGCTCCATT AATGGCTCAA 
    TCTGTTGAGC AAATGGTGAT CGACATGCAT AGTGCAAAGG CACAAGGCGC TGATGTTGTG 
    GAGGTCAGGT TGGACTGCAT TAGCAAGTTT CAGCCTAGGC AAGACCTGGA AACCATCATC 
    AGAAACAAGC CATTGCCGGT GATCATTGTC TACAGGCCAA AGTGGGAAGG TGGGCAGTAC 
    GAAGGGGATG AGCACAGAAG GTTGGAAGCA CTTCGTTTGG CAAATGATCT GGGAGCTGAT 
    TATATTGATT TGGAGCTTAA GGTTGCCTCT GAGCTGATAT GGGAACTGAA AAACAAGCAT 
    CAGAATGGTG GGAAAGTCAT TGTATCATCT TACTTGAATG GTGCAACCCC CTCGAAAGAA 
    AATCTCAGCC ATCTTGTTGC AACCATGCAA GCTACTGAAG CAGATATCAT CAAAGTTGTT 
    TCTAATGCAG ATGATATCAC AGAAATGGAA AGGATTTTTC ATTTGCTTTC GCATTGCGAG 
    GTGCCAGCAG TTGCATACTC TGTGGGGGAG AGAGGCCTCA TAAGCCAGCT GTTGTGCCCC 
    AAATTCGGTG GTGCTTTAGT CTATGGATCC ATGGAAGGAA ATTCAATTCC TGGTTTACCT 
    ACATTAGACA GCCTTAGAGA AGCCTACAAG GTTGACTGCA TTAATTCAGA TACTAAAGTT 
    TTCGGTCTTG TTTCAAAGCC AGTTGGCCAC AGCAAAGGCC CTCTGTTGCA TAATCCTACC 
    CTGAGACATG TGAACTTTAA TGGGATCTAT GTCCCCATGT TTGTCGATGA TCTCAAGAAG 
    TTCTTTGATG TCTACGCAAG CCCTGACTTT GCTGGTTATA GTGTTGGGTT TCCATACAAG 
    GAAGCTGTCG TGCAGTTCTG TGATGAAGTC CATCCACTGG CTAAGTGTAT TGGAGCTGTT 
    AATACCATCA TAAGGAGGCC CTGTGATGGG AAACTGATAG GTTATAATAC AGACTGTGAG 
    GGTTCAATAA CTGCAATTGA GGATGCTTTG AGAGATCAGA AATACGTCAA TGGCAGATCC 
    TTAAATTCTC CGTTGGCTGG GAAACAGTTT GTGGTAGTTG GTGCTGGAGG TGCTGGAAGA 
    GCAATTGCAG TTGGAGCTAA GAGTAGAGGA GCCCGTTTAA TTATTTTCGA CATCGATCTC 
    GAGAGAGCAA AGAGTCTTGC TCGAGCTGTT TCTGGTGAAG CTCAACATTT TGAAAGTCTA 
    GCACATTTCC AGCCTGAGAA TGGGGCAATC CTTGCAAATG CAACACCGAT TGGAATGCAT 
    CCGAGTACAG ATCGAATTCC CGCGGCCGAG GAAACCTTGG GGAACTACCA ACTGGTATTC 
    GATGCTGTTT ACACACCAAG AAAAACCAGA CTATTAAAAG ATGCTGATGC AGCTGGAGCA 
    ATTACAGTGA GTGGAGTTGA GATGTTCCTC AGACAGGCCA TCGGGCAGTT CAACCTCTTC 
    ACCGGCAGAG AAGCTCCGAA GGACTTCATG CGGGAGATTG TTTTAGCCAA ATTCTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,Déjardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasjärvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Leplé JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouzé P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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