Gene Symbol | LOC100136140 |
Entrez Gene ID | 100136140 |
Full Name | type I interferon |
Synonyms | IFN4,IFNb3 |
Gene Type | protein-coding |
Organism | Oncorhynchus mykiss(rainbow trout) |
ORF » Species Summary » Oncorhynchus mykiss » LOC100136140 cDNA ORF clone
Gene Symbol | LOC100136140 |
Entrez Gene ID | 100136140 |
Full Name | type I interferon |
Synonyms | IFN4,IFNb3 |
Gene Type | protein-coding |
Organism | Oncorhynchus mykiss(rainbow trout) |
mRNA | Protein | Name |
---|---|---|
XM_021622406.1 | XP_021478081.1 | type I interferon isoform X1 |
NM_001124433.1 | NP_001117905.1 | type I interferon precursor |
Identification of an additional two-cysteine containing type I interferon in rainbow trout Oncorhynchus mykiss provides evidence of a major gene duplication event within this gene family in teleosts.
Chang M, Nie P, Collet B, Secombes CJ, Zou J
Immunogenetics61(4)315-25(2009 Apr)
Characterization of the interferon genes in homozygous rainbow trout reveals two novel genes, alternate splicing and differential regulation of duplicated genes.
Purcell MK, Laing KJ, Woodson JC, Thorgaard GH, Hansen JD
Fish & shellfish immunology26(2)293-304(2009 Feb)
Identification of a second group of type I IFNs in fish sheds light on IFN evolution in vertebrates.
Zou J, Tafalla C, Truckle J, Secombes CJ
Journal of immunology (Baltimore, Md. : 1950)179(6)3859-71(2007 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100136140 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100136140 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OOf00513 | |
Clone ID Related Accession (Same CDS sequence) | NM_001124433.1 | |
Accession Version | NM_001124433.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 552bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1499529600000 | |
Organism | Oncorhynchus mykiss(rainbow trout) | |
Product | type I interferon precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AM235738.1. ##Evidence-Data-START## Transcript exon combination :: AM235738.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00041049, SAMN00139508 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGCTGTAT TGAAATGGTT GAGCATTTGC CTGACTCTGT TCTGCCAAGG CACAGCAGCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001117905.1 |
CDS | 33..584 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTGTAT TGAAATGGTT GAGCATTTGC CTGACTCTGT TCTGCCAAGG CACAGCAGCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OOf57565 | |
Clone ID Related Accession (Same CDS sequence) | XM_021622406.1 | |
Accession Version | XM_021622406.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 552bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1498406400000 | |
Organism | Oncorhynchus mykiss(rainbow trout) | |
Product | type I interferon isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_035088.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oncorhynchus mykiss Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTGTAT TGAAATGGTT GAGCATTTGC CTGACTCTGT TCTGCCAAGG CACAGCAGCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021478081.1 |
CDS | 33..584 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCTGTAT TGAAATGGTT GAGCATTTGC CTGACTCTGT TCTGCCAAGG CACAGCAGCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Identification of an additional two-cysteine containing type I interferon in rainbow trout Oncorhynchus mykiss provides evidence of a major gene duplication event within this gene family in teleosts. |
Characterization of the interferon genes in homozygous rainbow trout reveals two novel genes, alternate splicing and differential regulation of duplicated genes. |
Identification of a second group of type I IFNs in fish sheds light on IFN evolution in vertebrates. |