Gene Symbol | Ecr |
Entrez Gene ID | 406084 |
Full Name | ecdysone receptor |
Synonyms | AmEcR,EcR-A,EcR-B1,EcRA,EcRB1 |
Gene Type | protein-coding |
Organism | Apis mellifera(honey bee) |
Genome |
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ORF » Species Summary » Apis mellifera » Ecr cDNA ORF clone
Gene Symbol | Ecr |
Entrez Gene ID | 406084 |
Full Name | ecdysone receptor |
Synonyms | AmEcR,EcR-A,EcR-B1,EcRA,EcRB1 |
Gene Type | protein-coding |
Organism | Apis mellifera(honey bee) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001159355.1 | NP_001152827.1 | ecdysone receptor isoform B1 |
NM_001098215.2 | NP_001091685.2 | ecdysone receptor isoform A |
XM_016913298.1 | XP_016768787.1 | ecdysone receptor isoform X1 |
XM_016913298.2 | XP_016768787.2 | ecdysone receptor isoform X1 |
XM_006568053.3 | XP_006568116.2 | ecdysone receptor isoform X1 |
XM_006568053.2 | XP_006568116.1 | ecdysone receptor isoform X1 |
Finding the missing honey bee genes: lessons learned from a genome upgrade.
Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, , Hoff KJ, Holder ME, Hudson ME, Hunt GJ, Jiang H, Joshi V, Khetani RS, Kosarev P, Kovar CL, Ma J, Maleszka R, Moritz RF, Munoz-Torres MC, Murphy TD, Muzny DM, Newsham IF, Reese JT, Robertson HM, Robinson GE, Rueppell O, Solovyev V, Stanke M, Stolle E, Tsuruda JM, Vaerenbergh MV, Waterhouse RM, Weaver DB, Whitfield CW, Wu Y, Zdobnov EM, Zhang L, Zhu D, Gibbs RA,
BMC genomics1586(2014 Jan)
Structural diversity and evolution of the N-terminal isoform-specific region of ecdysone receptor-A and -B1 isoforms in insects.
Watanabe T, Takeuchi H, Kubo T
BMC evolutionary biology1040(2010 Feb)
EcR-A expression in the brain and ovary of the honeybee (Apis mellifera L.).
Takeuchi H, Paul RK, Matsuzaka E, Kubo T
Zoological science24(6)596-603(2007 Jun)
Insights into social insects from the genome of the honeybee Apis mellifera.
Nature443(7114)931-49(2006 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Ecr gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ecr cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OHd00039 | |
Clone ID Related Accession (Same CDS sequence) | NM_001098215.2 | |
Accession Version | NM_001098215.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1890bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1556812800000 | |
Organism | Apis mellifera(honey bee) | |
Product | ecdysone receptor isoform A | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AB490017.1 and AB267886.1. On Apr 15, 2009 this sequence version replaced NM_001098215.1. Transcript Variant: This variant (A) represents the shorter transcript but encodes the longer isoform (A). ##Evidence-Data-START## Transcript exon combination :: AB490017.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00113341, SAMN00120364 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001091685.2 |
CDS | 63..1952 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHd00310 | |
Clone ID Related Accession (Same CDS sequence) | NM_001159355.1 | |
Accession Version | NM_001159355.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1674bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1556812800000 | |
Organism | Apis mellifera(honey bee) | |
Product | ecdysone receptor isoform B1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AB330393.1, AB490050.1 and AB267886.1. Transcript Variant: This variant (B1) represents use of an alternate promoter and 5' exon and uses a distinct translation start site, compared to variant A. The resulting isoform (B1) has a shorter and distinct N-terminus, compared to isoform A. ##Evidence-Data-START## Transcript exon combination :: AB490050.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00113341, SAMN00120364 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCTGCAGA CTGTGCCCCG TGTGCCTGTC GCGGGGATCA AGCGGCGATG GGGTAACAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001152827.1 |
CDS | 426..2099 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTGCAGA CTGTGCCCCG TGTGCCTGTC GCGGGGATCA AGCGGCGATG GGGTAACAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHd09614 | |
Clone ID Related Accession (Same CDS sequence) | XM_016913298.1 , XM_006568053.2 | |
Accession Version | XM_016913298.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1893bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1463932800000 | |
Organism | Apis mellifera(honey bee) | |
Product | ecdysone receptor isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007077.3) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Apis mellifera Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016768787.1 |
CDS | 2450..4342 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHd09614 | |
Clone ID Related Accession (Same CDS sequence) | XM_016913298.1 , XM_006568053.2 | |
Accession Version | XM_006568053.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1893bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1463932800000 | |
Organism | Apis mellifera(honey bee) | |
Product | ecdysone receptor isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007077.3) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 24, 2016 this sequence version replaced XM_006568053.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Apis mellifera Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006568116.1 |
CDS | 855..2747 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHd32616 | |
Clone ID Related Accession (Same CDS sequence) | XM_016913298.2 , XM_006568053.3 | |
Accession Version | XM_016913298.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1890bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1537200000000 | |
Organism | Apis mellifera(honey bee) | |
Product | ecdysone receptor isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037645.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 19, 2018 this sequence version replaced XM_016913298.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Apis mellifera Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016768787.2 |
CDS | 1578..3467 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHd32616 | |
Clone ID Related Accession (Same CDS sequence) | XM_016913298.2 , XM_006568053.3 | |
Accession Version | XM_006568053.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1890bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1537200000000 | |
Organism | Apis mellifera(honey bee) | |
Product | ecdysone receptor isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037645.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 19, 2018 this sequence version replaced XM_006568053.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Apis mellifera Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006568116.2 |
CDS | 855..2744 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACACCA GCGACTCCAG CATGGACACG ACTAACGGGG GGGGCTCGAG CGCCGGGGTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Finding the missing honey bee genes: lessons learned from a genome upgrade. |
Structural diversity and evolution of the N-terminal isoform-specific region of ecdysone receptor-A and -B1 isoforms in insects. |
EcR-A expression in the brain and ovary of the honeybee (Apis mellifera L.). |
Insights into social insects from the genome of the honeybee Apis mellifera. |