Gene Symbol | Csd |
Entrez Gene ID | 406074 |
Full Name | complementary sex determiner |
Synonyms | GB11167 |
Gene Type | protein-coding |
Organism | Apis mellifera(honey bee) |
Genome |
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ORF » Species Summary » Apis mellifera » Csd cDNA ORF clone
Gene Symbol | Csd |
Entrez Gene ID | 406074 |
Full Name | complementary sex determiner |
Synonyms | GB11167 |
Gene Type | protein-coding |
Organism | Apis mellifera(honey bee) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001366705.1 | NP_001353634.1 | complementary sex determiner 1 |
NM_001011569.1 | NP_001011569.1 | complementary sex determiner |
NM_001011569.2 | NP_001011569.2 | complementary sex determiner 2 |
XM_016911076.1 | XP_016766565.1 | complementary sex determiner |
Evidence for Stabilizing Selection Driving Mutational Turnover of Short Motifs in the Eukaryotic Complementary Sex Determiner (Csd) Protein.
Koch V, Otte M, Beye M
G3 (Bethesda, Md.)8(12)3803-3812(2018 12)
Nucleotide variability at its limit? Insights into the number and evolutionary dynamics of the sex-determining specificities of the honey bee Apis mellifera.
Lechner S, Ferretti L, Schöning C, Kinuthia W, Willemsen D, Hasselmann M
Molecular biology and evolution31(2)272-87(2014 Feb)
Finding the missing honey bee genes: lessons learned from a genome upgrade.
Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, , Hoff KJ, Holder ME, Hudson ME, Hunt GJ, Jiang H, Joshi V, Khetani RS, Kosarev P, Kovar CL, Ma J, Maleszka R, Moritz RF, Munoz-Torres MC, Murphy TD, Muzny DM, Newsham IF, Reese JT, Robertson HM, Robinson GE, Rueppell O, Solovyev V, Stanke M, Stolle E, Tsuruda JM, Vaerenbergh MV, Waterhouse RM, Weaver DB, Whitfield CW, Wu Y, Zdobnov EM, Zhang L, Zhu D, Gibbs RA,
BMC genomics1586(2014 Jan)
Gradual molecular evolution of a sex determination switch through incomplete penetrance of femaleness.
Beye M, Seelmann C, Gempe T, Hasselmann M, Vekemans X, Fondrk MK, Page RE Jr
Current biology : CB23(24)2559-64(2013 Dec)
Polymorphism analysis of csd gene in six Apis mellifera subspecies.
Wang Z, Liu Z, Wu X, Yan W, Zeng Z
Molecular biology reports39(3)3067-71(2012 Mar)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Csd gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Csd cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OHd00028 | |
Clone ID Related Accession (Same CDS sequence) | NM_001011569.1 | |
Accession Version | NM_001011569.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1203bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1498233600000 | |
Organism | Apis mellifera(honey bee) | |
Product | complementary sex determiner | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY569721.1. On or before Jan 12, 2014 this sequence version replaced XM_006568426.1, XM_624917.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AY569721.1, AY569717.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01985569, SAMN01985573 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAAGCGAA ATATATCAAG TTATTCACAT CACGATGAGA AATTTAAACA ATTACGAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001011569.1 |
CDS | 1..1203 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAAGCGAA ATATATCAAG TTATTCACAT CACGATGAGA AATTTAAACA ATTACGAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHd34008 | |
Clone ID Related Accession (Same CDS sequence) | NM_001011569.2 | |
Accession Version | NM_001011569.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1209bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1553097600000 | |
Organism | Apis mellifera(honey bee) | |
Product | complementary sex determiner 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from QIUM02000014.1. On Oct 23, 2018 this sequence version replaced NM_001011569.1. Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR, uses an alternate splice site at an internal exon, and lacks an in-frame portion of the 5' coding region, compared to variant 1. The resulting isoform (2) is shorter than isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: KF730854.1, EU100886.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01985568, SAMN01985569 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAAACGAA ATATATCAAA TTATTCACAT CACGATGAGA AATTTAAACA ATTACGGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001011569.2 |
CDS | 61..1269 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAAACGAA ATATATCAAA TTATTCACAT CACGATGAGA AATTTAAACA ATTACGGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHd34009 | |
Clone ID Related Accession (Same CDS sequence) | NM_001366705.1 | |
Accession Version | NM_001366705.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1242bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1553097600000 | |
Organism | Apis mellifera(honey bee) | |
Product | complementary sex determiner 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from QIUM02000014.1. On Oct 23, 2018 this sequence version replaced XM_026439432.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: EU101390.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04413734 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAAACGAA ATATATCAAA TTATTCACAT CACGATGAGA AATTTAAACA ATTACGGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001353634.1 |
CDS | 231..1472 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAACGAA ATATATCAAA TTATTCACAT CACGATGAGA AATTTAAACA ATTACGGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHd21074 | |
Clone ID Related Accession (Same CDS sequence) | XM_016911076.1 | |
Accession Version | XM_016911076.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1224bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 1463932800000 | |
Organism | Apis mellifera(honey bee) | |
Product | complementary sex determiner | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007072.3) and transcript sequence (KF730850.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Apis mellifera Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 67 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## |
1 | ATGAAACGAA ATATATCAAA TTATTCACAT CACGATGAGA AATTTAAACA ATTACGGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016766565.1 |
CDS | 258..1481 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAACGAA ATATATCAAA TTATTCACAT CACGATGAGA AATTTAAACA ATTACGGAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Evidence for Stabilizing Selection Driving Mutational Turnover of Short Motifs in the Eukaryotic Complementary Sex Determiner (Csd) Protein. |
Nucleotide variability at its limit? Insights into the number and evolutionary dynamics of the sex-determining specificities of the honey bee Apis mellifera. |
Finding the missing honey bee genes: lessons learned from a genome upgrade. |
Gradual molecular evolution of a sex determination switch through incomplete penetrance of femaleness. |
Polymorphism analysis of csd gene in six Apis mellifera subspecies. |