ORF » Species Summary » Oryza sativa Japonica Group » Reactome

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Oryza sativa Japonica Group (Japanese rice)

Browse by Letter Index, Genomic Locus


Josephin domain DUBs Metalloprotease DUBs
M Phase M/G1 Transition
Cdc20:Phospho-APC/C mediated degradation of Cyclin A Extension of Telomeres
IRS-mediated signalling SOS-mediated signalling
VEGFA-VEGFR2 Pathway VEGFR2 mediated cell proliferation
MAPK1/MAPK3 signaling RHO GTPases Activate Formins
GPCR downstream signaling G-protein beta:gamma signalling
Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R) Signaling by Hedgehog
Metabolism of carbohydrates 5-Phosphoribose 1-diphosphate biosynthesis
Triglyceride Biosynthesis Cholesterol biosynthesis
Synthesis of bile acids and bile salts via 24-hydroxycholesterol Synthesis of PA
Synthesis of Lipoxins (LX) ChREBP activates metabolic gene expression
Pyruvate metabolism and Citric Acid (TCA) cycle Pyrimidine biosynthesis
Carnitine synthesis Phenylalanine and tyrosine catabolism
Metabolism of polyamines Biological oxidations
Cytochrome P450 - arranged by substrate type Vitamins
Degradation of the extracellular matrix RNA Polymerase II Pre-transcription Events
mRNA Capping mRNA Splicing - Major Pathway
Processing of Intronless Pre-mRNAs Major pathway of rRNA processing in the nucleolus and cytosol
Antigen processing-Cross presentation Innate Immune System
MyD88 cascade initiated on plasma membrane TRIF-mediated TLR3/TLR4 signaling
Toll Like Receptor 4 (TLR4) Cascade Signaling by Interleukins
Astrocytic Glutamate-Glutamine Uptake And Metabolism Activation of NMDA receptor upon glutamate binding and postsynaptic events
Platelet calcium homeostasis HATs acetylate histones
RMTs methylate histone arginines Negative feedback regulation of MAPK pathway
HSF1 activation Cellular Senescence
Metal ion SLC transporters Zinc influx into cells by the SLC39 gene family
Vasopressin regulates renal water homeostasis via Aquaporins Translation
Eukaryotic Translation Initiation Ribosomal scanning and start codon recognition
N-glycan trimming in the ER and Calnexin/Calreticulin cycle SUMO is conjugated to E1 (UBA2:SAE1)
IRE1alpha activates chaperones Membrane Trafficking
DNA Damage Bypass Translesion synthesis by Y family DNA polymerases bypasses lesions on DNA template
Translesion synthesis by REV1 Translesion Synthesis by POLH
DNA Double-Strand Break Repair HDR through Homologous Recombination (HR) or Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR) HDR through MMEJ (alt-NHEJ)
DNA Damage Recognition in GG-NER Gap-filling DNA repair synthesis and ligation in GG-NER
Dual incision in TC-NER Mismatch Repair
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha) Cell Cycle Checkpoints
Autodegradation of the E3 ubiquitin ligase COP1 G0 and Early G1
Switching of origins to a post-replicative state Leading Strand Synthesis
Processive synthesis on the lagging strand Ubiquitin-dependent degradation of Cyclin D
Ubiquitin-dependent degradation of Cyclin D1 Removal of licensing factors from origins
G2/M Transition FBXL7 down-regulates AURKA during mitotic entry and in early mitosis
Antimicrobial peptides Synthesis of active ubiquitin: roles of E1 and E2 enzymes
TNFR2 non-canonical NF-kB pathway Presynaptic phase of homologous DNA pairing and strand exchange
Formation of TC-NER Pre-Incision Complex Stabilization of p53
Activation of the pre-replicative complex E2F mediated regulation of DNA replication
Polymerase switching Regulation of DNA replication
G2 Phase APC/C-mediated degradation of cell cycle proteins
Chromosome Maintenance Telomere C-strand synthesis initiation
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