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Single Cells of Neurospora Crassa Show Circadian Oscillations, Light Entrainment, Temperature Compensation, and Phase Synchronization

Zhaojie Deng ; Jia Hwei Cheong ; Cristian Caranica ; Lingyun Wu ; Xiao Qiu ; Michael T Judge. 2019; 
Zhaojie Deng ; Jia Hwei Cheong ; Cristian Caranica ; Lingyun Wu ; Xiao Qiu ; Michael T. Judge
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Gene Synthesis In order to carry out the mixing experiment with two populations of cells with different phases, a second fluorescent recorder construct was needed with non-overlapping excitation and emission spectra to mCherry. The mVenus fluorescent recorder was recommended [34]. An M249 plasmid served as the starting point [35] (with construct strategy in supplementary S Fig. 1); this plasmid (S Fig. 2) contained a bialaphos selectable marker for transformation of N. crassa as well as a luciferase recorder. A pUC57 plasmid containing Pccg-2:mVenus was generated (Genscript, Inc., 860 Centennial Ave, Pascataway, NJ 08854) with homology to M249. The gsy:luc segment in M249 was replaced at the BstB1 and SgrDI restriction sites in M249 with the Pccg-2:mVenus fragment. The M249 with Pccg-2:mVenus was co-transformed with a plasmid encoding Cas9 (p415-GalL-Cas9-CYC1t) and with the csr-1 specific guide RNA (p426-SNR52p-gRNA.CAN1.Y-SUP4t) [35] by electroporation. Electroporation into N. crassawas done with a Genepulser Xcell electroporater set at 7.5 kV/cm (1.5 kV in a 2cm cuvette), capacitance of 25 mF, and resistance of 600 ohms (BioRad, Hercules, CA). A more detailed description of the mVenus recorder construct in N. crassa is available [29]. The strain was made homokaryotic with a cross to a band (bd) strain(1858A, Fungal Genetics Stock Center, Manhattan, KS). The mCherry and mVenus recorder strains were grown in media as above and placed in a LED light source as described in Fig. 8A to convert the mVenus strains to night owls. The filter set for excitation of mCherry (mVenus) was at 585/35 (478/28) with emission at 645/60 (527/54) (Zeiss #61HE) [29]. The excitation spectrum is given at: https://www.micro-shop.zeiss.com/index.php?s=1502076664024ba&1=en&p=de&f=f&a=v&b=f&id=489061-9901-000&o= Get A Quote

Abstract

Using a microfluidics device, fluorescence of a recorder (mCherry or mVenus) gene driven by a clock-controlled gene-2 promoter (ccg-2p) was measured simultaneously on over 1000 single cells of Neurospora crassa every half hour for 10 days under each of varied light and temperature conditions. Single cells were able to entrain to light over a wide range of day lengths, including 6, 12, or 36 h days. In addition, the period of oscillations in fluorescence remained remarkably stable over a physiological range of temperatures from 20 °C to 30 °C (Q 10 = 1.00-1.07). These results provide evidence of an autonomous clock in most single cells of N. crassa. While most cells had clocks, there was substantial variatio... More

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