okr cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	okr
Entrez Gene ID	33507
Full Name	okra
Synonyms	CG3736,DhR54,DmRAD54,DmRad54,Dmel\CG3736,Dmrad54,OKR,Okr,RAD54,RAD54L,Rad54,Ras54,rad54
General protein information	Preferred Names okra Names CG3736 gene product from transcript CG3736-RA CG3736-PA okr-PA
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 2L Map Location: 23C4-23C4\|2-1 cM

mRNA and Protein(s)

mRNA	Protein	Name
NM_057313.5	NP_476661.1	okra

Pathways from BioSystems

Homologies

Anopheles gambiae (African malaria mosquito)	AgaP_AGAP008748	XP_557901.3
Danio rerio (zebrafish)	rad54l	NP_957438.1
Arabidopsis thaliana (thale cress)	RAD54	NP_188552.3
Xenopus tropicalis (tropical clawed frog)	rad54l	NP_001001241.1
Pan troglodytes (chimpanzee)	RAD54L	XP_513146.3
Mus musculus (house mouse)	Rad54l	NP_033041.3
Gallus gallus (chicken)	RAD54L	XP_422447.3
Caenorhabditis elegans (roundworm)	rad-54	NP_492438.1
Saccharomyces cerevisiae (baker's yeast)	RAD54	NP_011352.1
Bos taurus (cattle)	RAD54L	NP_001124238.1
Eremothecium gossypii	AGOS_AEL297W	NP_984563.2
Kluyveromyces lactis	KLLA0A03069g	XP_451134.1
Oryza sativa (rice)	Os02g0762800	NP_001048207.2
Magnaporthe oryzae (rice blast fungus)	MGG_03549	XP_003716366.1
Neurospora crassa	NCU11255	XP_959470.1
Drosophila melanogaster (fruit fly)	okr	NP_476661.1
Schizosaccharomyces pombe (fission yeast)	rhp54	NP_594290.1
Homo sapiens (human)	RAD54L	NP_003570.2
Canis lupus familiaris (dog)	RAD54L	XP_532592.3
Rattus norvegicus (Norway rat)	Rad54l	NP_001128432.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following okr gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the okr cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa13584	NM_057313.5 Latest version!	Drosophila melanogaster okra (okr), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$391.30 $559.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

okr ( NM_057313.5 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_476661.1 Drosophila melanogaster okra (okr), mRNA.

Price & Availability↑

CloneID	OFa13584
Clone ID Related Accession (Same CDS sequence)	NM_057313.5
Accession Version	NM_057313.5 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2355bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	1556035200000
Organism	Drosophila melanogaster(fruit fly)
Product	okra
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jan 16, 2013 this sequence version replaced NM_057313.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGCGGCGCA GTCTGGCTCC CAGCCAACGT GGACCACTGC GTCCCGAGTC CCGTCACTCC 
TTCACGCCGC CACTGCTGAA GAAAAACAAG CGATCCTGCC AGCAGGAACT GGAGCGAGAG 
CAAGAACTGG ACAGAAGACG ACTGGGCGCC CTCCGAGATG CCAGCAACAC ATCAGAGCTC 
CCACTGCCTA TTCGCTTCAC GGCGAACAGC GAGTATGAGT TGGCCATTGC CAAGGTTCTG 
GCACGGAAGT TCAAGGTGCC CATGGACAAT TACGTACCGG ATTACGGTGG TAAACGGGTC 
CTGGGCGTGC GGCGCTGCAT TTCCCGACGA CCCCTACACG ATCCGATGGC CTGCAACGCC 
TTGGTACTCT TCCATCCACC CGCCTACACA GAACACGAGC GCATGGGCAT GGATCCGACC 
AAGGTTCTGG TGCACGTCGT CGTCGATCCG CTGCTGAGCA ACATATTGCG GCCGCACCAG 
CGCGAGGGAG TGCGTTTCAT GTACGAGTGT GTGGAGGGAA AGCGGGGCAA CTTCAATGGA 
TGCATCATGG CCGACGAAAT GGGTCTCGGG AAGACGCTGC AGTGCGTAAC GCTGGTCTGG 
ACACTTCTAA GGCAGGGGCC CGAGTGCAAG CCGACGATCA ACAAAGCCAT TGTCGTGTCT 
CCATCATCGC TGGTTAAGAA CTGGGAGAAG GAGTTTACCA AGTGGCTTCA CGGTCGACTC 
CTTTGCCTGC CCATGGAGGG CGGGACCAAG GAGAACACCA TCCGAGCACT CGAGCAGTTC 
TCCATGACTT CTGCCCGGCT GGGGACACCT GTTCTGCTCA TCAGCTACGA GACATTTCGC 
ATCTACGCGG AGATCCTGTG CAAGTACGAG GTGGGAATGG TGATATGCGA CGAGGGACAT 
CGCCTCAAGA ACAGCGACAA TCTGACGTAT CAGGCTCTCA TGGGACTGAA GACAAAGCGA 
CGGGTCTTGC TTTCCGGCAC TCCCATCCAG AACGATCTTA CTGAGTACTA CAGCCTGGTG 
AACTTTGTAA ACCCGGAGAT GCTGGGAACG GCGGCCGTGT TTAAGCGCAA CTTCGAGAGC 
GCTATTCTGC GGGGCCAGAA TACTGACTCC ACGGAACAGG AGCGACAACG GGCCATAGAG 
AAGACACAGG AGCTGATAGG TCTGGTCGAT CAGTGCATCA TTCGTCGCAC TAATCAAATT 
CTAACCAAAT ATCTGCCGGT TAAGTTTGAA ATGGTTATCT GTGCGAAACT GACGGCGATT 
CAACTCGAGC TATACACGAA TTTCTTGAAG TCTGATCAAG TTCGACGTAG TTTGGCGGAT 
TGCAATGAAA AGGCTTCGCT TACGGCGCTG GCAGACATTA CAACGCTTAA GAAGATTTGC 
AGTCATCCGG ATCTCATATA TGAGAAGCTC ACTGCGCGGG AAAAGGGATT CGAAAACTCC 
CAAAATGTGC TGCCTAGTAA TTACAAACCA AAGGATCTCA ATCCAGAGCT AAGTGGCAAG 
TTCATGCTCC TGGATTTCAT GCTGGCAGCA ATACGTGCAG AGGGCAACGA CAAGGTGGTT 
CTCATTTCCA ATTACACACA GACCCTGGAC TTGTTCGAGC AGCTCGCGAG GAAGCGAAAG 
TACGGATTTG TCCGGCTTGA TGGCACCATG TCCATCAAGA AGCGATCGAA GGTTGTTGAC 
CGATTCAATG ACCCGGAGTC TGACAGCTTC CTTTTCATGC TGAGCAGCAA GGCTGGCGGC 
TGCGGCTTGA ATTTGATTGG AGCCAACCGC CTGTTCATGT TTGACCCAGA CTGGAATCCG 
GCCAACGATG AGCAGGCAAT GGCCAGAGTG TGGCGTGACG GGCAAAAGAA GCCCTGTTAC 
ATATATCGCC TCGTTGCCAG TGGTTCCATC GAGGAGAAGA TCCTGCAGCG ACAGACGCAC 
AAAAAATCCC TGTCGAGCAC CATCATTGAC AACAACGAGT CGGCCGAGAA GCATTTCACC 
CGCGACGATC TGAAGGACTT GTTTACATTT GATGCGAACA TTCTGTCCGA CACACACGAC 
AAGCTCAAGT GTAAGCGCTG CGTTCAAAAT ATACAAATGA AGCCACCGCC CGAGGACACG 
GACTGCACCT CGCATTTGTC ACAATGGTAC CATTGCTCCA ACAACAGAGG CCTGCCTGAC 
AATATTCTCG CCCAGGCCTG GATGGATTGC AAGTGCGTGT CCTTTGTCTT CCACCACCGA 
TCGCAGGCTC AGGAAATTGT GCCGAGTGCT GAGGAGGAAG CAACAGATCA GCCAGAGGAA 
AAACCAGAAA GCCGCAAACG ATCATCCACG CCCGCCAGTG ATGACAGTGC CGATGAGGAC 
TTCCGTGGAT TCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_476661.1
CDS	51..2405
Translation	MRRSLAPSQRGPLRPESRHSFTPPLLKKNKRSCQQELEREQELDRRRLGALRDASNTSELPLPIRFTANSEYELAIAKVLARKFKVPMDNYVPDYGGKRVLGVRRCISRRPLHDPMACNALVLFHPPAYTEHERMGMDPTKVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFTFDANILSDTHDKLKCKRCVQNIQMKPPPEDTDCTSHLSQWYHCSNNRGLPDNILAQAWMDCKCVSFVFHHRSQAQEIVPSAEEEATDQPEEKPESRKRSSTPASDDSADEDFRGF

Target ORF information:

RefSeq Version	NM_057313.5
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster okra (okr), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_057313.5

ORF Insert Sequence:

ATGCGGCGCA GTCTGGCTCC CAGCCAACGT GGACCACTGC GTCCCGAGTC CCGTCACTCC 
TTCACGCCGC CACTGCTGAA GAAAAACAAG CGATCCTGCC AGCAGGAACT GGAGCGAGAG 
CAAGAACTGG ACAGAAGACG ACTGGGCGCC CTCCGAGATG CCAGCAACAC ATCAGAGCTC 
CCACTGCCTA TTCGCTTCAC GGCGAACAGC GAGTATGAGT TGGCCATTGC CAAGGTTCTG 
GCACGGAAGT TCAAGGTGCC CATGGACAAT TACGTACCGG ATTACGGTGG TAAACGGGTC 
CTGGGCGTGC GGCGCTGCAT TTCCCGACGA CCCCTACACG ATCCGATGGC CTGCAACGCC 
TTGGTACTCT TCCATCCACC CGCCTACACA GAACACGAGC GCATGGGCAT GGATCCGACC 
AAGGTTCTGG TGCACGTCGT CGTCGATCCG CTGCTGAGCA ACATATTGCG GCCGCACCAG 
CGCGAGGGAG TGCGTTTCAT GTACGAGTGT GTGGAGGGAA AGCGGGGCAA CTTCAATGGA 
TGCATCATGG CCGACGAAAT GGGTCTCGGG AAGACGCTGC AGTGCGTAAC GCTGGTCTGG 
ACACTTCTAA GGCAGGGGCC CGAGTGCAAG CCGACGATCA ACAAAGCCAT TGTCGTGTCT 
CCATCATCGC TGGTTAAGAA CTGGGAGAAG GAGTTTACCA AGTGGCTTCA CGGTCGACTC 
CTTTGCCTGC CCATGGAGGG CGGGACCAAG GAGAACACCA TCCGAGCACT CGAGCAGTTC 
TCCATGACTT CTGCCCGGCT GGGGACACCT GTTCTGCTCA TCAGCTACGA GACATTTCGC 
ATCTACGCGG AGATCCTGTG CAAGTACGAG GTGGGAATGG TGATATGCGA CGAGGGACAT 
CGCCTCAAGA ACAGCGACAA TCTGACGTAT CAGGCTCTCA TGGGACTGAA GACAAAGCGA 
CGGGTCTTGC TTTCCGGCAC TCCCATCCAG AACGATCTTA CTGAGTACTA CAGCCTGGTG 
AACTTTGTAA ACCCGGAGAT GCTGGGAACG GCGGCCGTGT TTAAGCGCAA CTTCGAGAGC 
GCTATTCTGC GGGGCCAGAA TACTGACTCC ACGGAACAGG AGCGACAACG GGCCATAGAG 
AAGACACAGG AGCTGATAGG TCTGGTCGAT CAGTGCATCA TTCGTCGCAC TAATCAAATT 
CTAACCAAAT ATCTGCCGGT TAAGTTTGAA ATGGTTATCT GTGCGAAACT GACGGCGATT 
CAACTCGAGC TATACACGAA TTTCTTGAAG TCTGATCAAG TTCGACGTAG TTTGGCGGAT 
TGCAATGAAA AGGCTTCGCT TACGGCGCTG GCAGACATTA CAACGCTTAA GAAGATTTGC 
AGTCATCCGG ATCTCATATA TGAGAAGCTC ACTGCGCGGG AAAAGGGATT CGAAAACTCC 
CAAAATGTGC TGCCTAGTAA TTACAAACCA AAGGATCTCA ATCCAGAGCT AAGTGGCAAG 
TTCATGCTCC TGGATTTCAT GCTGGCAGCA ATACGTGCAG AGGGCAACGA CAAGGTGGTT 
CTCATTTCCA ATTACACACA GACCCTGGAC TTGTTCGAGC AGCTCGCGAG GAAGCGAAAG 
TACGGATTTG TCCGGCTTGA TGGCACCATG TCCATCAAGA AGCGATCGAA GGTTGTTGAC 
CGATTCAATG ACCCGGAGTC TGACAGCTTC CTTTTCATGC TGAGCAGCAA GGCTGGCGGC 
TGCGGCTTGA ATTTGATTGG AGCCAACCGC CTGTTCATGT TTGACCCAGA CTGGAATCCG 
GCCAACGATG AGCAGGCAAT GGCCAGAGTG TGGCGTGACG GGCAAAAGAA GCCCTGTTAC 
ATATATCGCC TCGTTGCCAG TGGTTCCATC GAGGAGAAGA TCCTGCAGCG ACAGACGCAC 
AAAAAATCCC TGTCGAGCAC CATCATTGAC AACAACGAGT CGGCCGAGAA GCATTTCACC 
CGCGACGATC TGAAGGACTT GTTTACATTT GATGCGAACA TTCTGTCCGA CACACACGAC 
AAGCTCAAGT GTAAGCGCTG CGTTCAAAAT ATACAAATGA AGCCACCGCC CGAGGACACG 
GACTGCACCT CGCATTTGTC ACAATGGTAC CATTGCTCCA ACAACAGAGG CCTGCCTGAC 
AATATTCTCG CCCAGGCCTG GATGGATTGC AAGTGCGTGT CCTTTGTCTT CCACCACCGA 
TCGCAGGCTC AGGAAATTGT GCCGAGTGCT GAGGAGGAAG CAACAGATCA GCCAGAGGAA 
AAACCAGAAA GCCGCAAACG ATCATCCACG CCCGCCAGTG ATGACAGTGC CGATGAGGAC 
TTCCGTGGAT TCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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okr cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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